BAC Information

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BAC

Clone NameMSMg01-388I05
Chromosome15 (Build37)
Map Location 84,595,700 - 84,596,195
singlet/doubletsinglet
Overlap gene3110043J09Rik
Upstream geneMpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l, Arhgap8
Downstream genePhf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388I05.T7 (MSMg01no388_i05.b1)MSMg01-388I05.TJ (MSMg01no388_i05.g1)
ACCAG490991AG490992
length768753
length of high quality
(start - end)
310 (96 - 405)496 (81 - 576)
definitionCHROMAT_FILE: MSMg01no388_i05.b1 PHD_FILE: MSMg01no388_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:52 2005CHROMAT_FILE: MSMg01no388_i05.g1 PHD_FILE: MSMg01no388_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTCC
TCTTTCTGGGTGGATATGCGTTTGTGTGATTGTGCATACTCAGCCTGTGA
AGGTCAGGGGTCAACTGGAGGAATCTTCCCCAGTCACTCTCCAACTTAGT
TTTTGAGACAGGTCCTCTTACCAAACCTGGAGCTCACCTATTTGGCTGGA
TTGGCTGGCCAGTGAGCTTCGGGGATCTTCGTGTGTCGCTTGGGTGCTTG
GGATAAAACAAACTCACTCTCTCTTATTTATTTATTTAGAGACAGCCTTT
CTTTGTGTAGCCCTGACTCTGCCATGGAACTCAGTATGAAGGAGACCAGG
CTTACCTCGAACTCTCGGAGCTCCGTCTGCCTCTGTCTCCCGAGTGCTGG
GATTAACGGCTTGTGCCACCACCCAGCTGAAGCTCCGTTCTTCATGCTTG
TGTAGAAAGCACTTTTCTGACTGAGCCGGCTCCTCAGCTCCAAACCTTCT
CTGGNAAGAGATGACACCAGCCCCCAGTTGGCTTTAGGATTCATTGACCT
ATCTGCCAAAGGGCTGTGCCATTTATGTACAGCCAGCTGCCCCTGATCCT
TACCGTAATCCCCCCATCTCCTCCCCCCCCTAACCTCCTCCTCCTCCTCC
TACCCCAATCTGCCCCCGACTGCGCTTTCCTCTACGCGTCATCCCTCCCC
TCCCCCCCCCCCCCTCTCCAACACTCCATCCCTTCCTTTCCTAACACGCT
CCTCTCTCCCCTTCCCAC
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATGTAGACCAGGATCCA
CCTGCCTCTGTCTCTCAAGTGTGGGATTAAATTAAATGAGCACCTAGTCT
AGTCTCCTGGGTCCATGCTCACAGTTAGATATTCATCTATCTTCTTGGCT
GTAATACTTTAGTGTCTGGCAAGCTCCTACTCATCCCTCAAAACCCTGCC
ATGCAGTAGCCCCCAGTATTCCCCACACCATATTCTGGGTGGAGTTCCGG
CACTCTGTTGTCCTTCCAAAGTTTGGACACTCATGGCTGCTTCATGGAGG
CTGAAGCTGTCTCTTTCCCCAGAGACTCCTTGATGTTGTATCTTCTCTGG
AAAGGGGAATCTGAGAGCCTTCCCCTGGCCATGCCCGCCATCAAGGTCTG
GAATGAATAAGCCAGTACATTCTTCTCCCTCAGCCTCAGAGACAAAAATC
AAGGTGAACTCATCCCCCCGGTGCTGCGTTGGACGGTGACATATCTGAGA
GAAAAAGGTAAGGAGCTGCCTCTAGCCGAGACACTCAAAGGGGCTTTATT
TCAGCTCCTGAACATCCCCCACATGTGTATGGCTGAATATGCCCTGTGGC
TTGGAAGGCACATAGAAGCATTGCAGGTGGCCAAGGCCTGTGGTCCCTTG
GGGCGGGTATAACCGGATGGCGCTCCCACCGGAAACCCCCGAAGAAAAGA
CTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_i05.g1 MSMg01no388_i05.g1 CHROMAT_FILE:
MSMg01no388_i05.g1 PHD_FILE: MSMg01no388_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:52 2005
         (496 letters)



>mm_chr15_84595500_84596395
          Length = 896

 Score =  951 bits (492), Expect = 0.0
 Identities = 495/496 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatgtagaccaggatccacctgcctctgtctctcaagtgtgggattaaattaaatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatgtagaccaggatccacctgcctctgtctctcaagtgtgggattaaattaaatgag 260

                                                                       
Query: 61  cacctagtctagtctcctgggtccatgctcacagttagatattcatctatcttcttggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacctagtctagtctcctgggtccatgctcacagttagatattcatctatcttcttggct 320

                                                                       
Query: 121 gtaatactttagtgtctggcaagctcctactcatccctcaaaaccctgccatgcagtagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaatactttagtgtctggcaagctcctactcatccctcaaaaccctgccatgcagtagc 380

                                                                       
Query: 181 ccccagtattccccacaccatattctgggtggagttccggcactctgttgtccttccaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccccagtattccccacaccatattctgggtggagttccggcactctgttgtccttccaaa 440

                                                                       
Query: 241 gtttggacactcatggctgcttcatggaggctgaagctgtctctttccccagagactcct 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 gtttggacactcatggctgcttcatggaggctgaagctgtctctttccccggagactcct 500

                                                                       
Query: 301 tgatgttgtatcttctctggaaaggggaatctgagagccttcccctggccatgcccgcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgatgttgtatcttctctggaaaggggaatctgagagccttcccctggccatgcccgcca 560

                                                                       
Query: 361 tcaaggtctggaatgaataagccagtacattcttctccctcagcctcagagacaaaaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaaggtctggaatgaataagccagtacattcttctccctcagcctcagagacaaaaatc 620

                                                                       
Query: 421 aaggtgaactcatccccccggtgctgcgttggacggtgacatatctgagagaaaaaggta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaggtgaactcatccccccggtgctgcgttggacggtgacatatctgagagaaaaaggta 680

                           
Query: 481 aggagctgcctctagc 496
           ||||||||||||||||
Sbjct: 681 aggagctgcctctagc 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)