BAC Information

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BAC

Clone NameMSMg01-388M09
Chromosome15 (Build37)
Map Location 46,357,140 - 46,357,476
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039389, EG432951
Downstream geneLOC100039438, LOC665130, LOC100039485, LOC100039493
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388M09.T7 (MSMg01no388_m09.b1)MSMg01-388M09.TJ (MSMg01no388_m09.g1)
ACCAG491188AG491189
length805762
length of high quality
(start - end)
368 (24 - 391)337 (82 - 418)
definitionCHROMAT_FILE: MSMg01no388_m09.b1 PHD_FILE: MSMg01no388_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:10 2005CHROMAT_FILE: MSMg01no388_m09.g1 PHD_FILE: MSMg01no388_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCGCTATACGACTCCTATTTCCAGAGGATCCGCGGAATTCTGAACTATT
CCATCTGGCTCTGGGCTTTTTCTTTTTTTCTTTTTTCTTTTTTTTTCCTT
TTTTGAATGGGAGACTTCTAACGACTGTTTCTATTTCCCTAGGGGATATG
GGACTGTGTAGATGGTTTATCTGATCTTGATTTAATTTGGTACCTGGTAT
GTGTCTAAAAAATCATCCATTTTGTCTAGATTTTACAGTTTTGTTGAATA
TGGAATTTCTTCAGTTTCTGTTGTTATTTCTCCCTTTTCATTCCTGATTT
TGTTAATTTGGATACTGTGTCTGTGCCCTCTATTTAATTTGACTAAGGGT
TTATCTATCTTCTTGATTTTCTCAAAGAATCAGCTCCTAGTTTTGTTGCA
CCCACGCATAGTTCTCTTTGTTTCTACTTGGTTGTTTTTAGCCCTGAGCT
TGATTATTTCTTGCCCTCTACTCCTTTTGGGCGCATTTGCTTCTTTTTAT
CCCAGCATTTTTCCACCTGCCGCTAAACCTCTTAGCTCTGACCTCTCCCA
CTTCTCTACAGGCAGGGTCCAAGATGTCCTATCTTTTCTTTTTCGCTCTT
TCTCCTCCTCGGTTCTCTTTTCCTCCTCCTCCGTGCCCCTCCCCTTCTTT
CTCACCCTCTCAATCTTCCCCTAAACTTTCCGCCTTTCCCCCCCCCCCCC
CCTCTTCCTTCCTCTATACCCTTCTTCTTTTCCTCCCCCTCTCCCCTGTC
ATTCCCCTTCCTCCACTCCTTTCTATCCACCTCCCACTATTTCTCTTTTT
TCCCN
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACTATTTTGGAAGCTTA
TGATAGAAATTAGGTGGTTTATTATTTTTTTCCTGAGATTTTTCTGCATC
TAGGGAAAATATGATTTTATATTATGTAACCTTATTAATATTAATATTTA
TGTGATATTTATTCATTATTTACAGCTTAATATTTTGTCCTGTGCTGTTG
TGGATGGCTCTGGTGCTGTTTATATTTTAATGTTAATTCCACTTTCCCAG
GAGGAGCTCTCTGGAATGAGGAATGTTTCACATACTCAGATGACCTCTTG
TGAACCTTCCCCTAATGAATAAATAAGCCAATCACTGGGTAAATGGGAGG
AACTTCTGGGTTGGAGAGACACACAGACCTCTTGTGAACCTTCCCCTAAT
GAATAAATAAGCCAATCACTGGGTAAATGGGAGGAACTTCTGGGTTGGAG
AGAGAAAGAGAGGAAGCAGGAGAGAGAGGGGCCTTTGGACAGGGACAGTG
AGAGGAAAAAATGTAACTACCTGGTGTCCCAGTTTAAATGCCGAATTACA
TTCCCCATCAGACCATTTAACTTTATATGGGCTACCCAACAAAACTCCAG
TTCGTGTGTCCTCCTTGCTCGGGCCCCCTTTCCTCCCGAACTCCCTTTGG
GGGGAGCTTTCCCTCTTCCCCCCTTCCCCCGTTTTCCCACTATATCGCGT
TATTCGTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_m09.g1 MSMg01no388_m09.g1 CHROMAT_FILE:
MSMg01no388_m09.g1 PHD_FILE: MSMg01no388_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:10 2005
         (337 letters)



>mm_chr15_46356940_46357676
          Length = 737

 Score =  613 bits (317), Expect = e-180
 Identities = 332/337 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atactattttggaagcttatgatagaaattaggtggtttattatttttttcctgagattt 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atactattttggaagcttacgatagaaattaggtggtttattatttttttcctgagattt 260

                                                                       
Query: 61  ttctgcatctagggaaaatatgattttatattatgtaaccttattaatattaatatttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctgcatctagggaaaatatgattttatattatgtaaccttattaatattaatatttat 320

                                                                       
Query: 121 gtgatatttattcattatttacagcttaatattttgtcctgtgctgttgtggatggctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgatatttattcattatttacagcttaatattttgtcctgtgctgttgtggatggctct 380

                                                                       
Query: 181 ggtgctgtttatattttaatgttaattccactttcccaggaggagctctctggaatgagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtgctgtttatattttaatgttaattccactttcccaggaggagctctctggaatgagg 440

                                                                       
Query: 241 aatgtttcacatactcagatgacctcttgtgaaccttcccctaatgaataaataagccaa 300
           ||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgcgtcacatactcaggtgacctcttgtgaaccttcccctaatgaataaataagccaa 500

                                                
Query: 301 tcactgggtaaatgggaggaacttctgggttggagag 337
           |||||||||||||||||| ||||||||||||||||||
Sbjct: 501 tcactgggtaaatgggagtaacttctgggttggagag 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)