BAC Information

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BAC

Clone NameMSMg01-389C17
Chromosome15 (Build37)
Map Location 44,915,594 - 44,916,076
singlet/doubletsinglet
Overlap genenone
Upstream geneTrhr, LOC665041, Nudcd1, Eny2, Pkhd1l1, Ebag9, 5730410E15Rik, A930017M01Rik, EG432950
Downstream geneKcnv1, LOC100039389, EG432951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389C17.T7 (MSMg01no389_c17.b1)MSMg01-389C17.TJ (MSMg01no389_c17.g1)
ACCAG491489AG491490
length772753
length of high quality
(start - end)
467 (48 - 514)483 (79 - 561)
definitionCHROMAT_FILE: MSMg01no389_c17.b1 PHD_FILE: MSMg01no389_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:41 2005CHROMAT_FILE: MSMg01no389_c17.g1 PHD_FILE: MSMg01no389_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTCTGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTACCAGTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGT
TCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTG
ATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCG
CATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAA
TGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAG
TGACCATAGGTGTGTGGGCTCATTTCTGCGGCCTCAATTCCATTCCATTG
GCCTACTTGGCTGTCCTCTATCCCGTACCATGCAGCTTTTATCACAATTG
CTCCGCAGCAAAATTTTATGCCCGGCCCCGCTGATTCTGCCAGAACCTCC
CTTCTCCCTTGAAAGAACTTTCTGCCCTCCCCCGGTTCTGGCCATCCCTC
CAAAATTGTCTCCCTCCTCCTT
NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGTGTTGGTTCCAGGCATT
GATTTCAGGTAACTGGGCTTAGTGGCAAGAGCCTATACTCACTGAGCCAT
CTTTGCAGAATCTTGTATAGTTTGCCAACACATGTGACTGTTCTCTAAAA
AATGTTAAGATCTGCTGTACCATGAACATGTAATCTGTGATCTGCTTTTA
TATACATTGTTATTGCTTAACAAACCTAAGCTAGTTCATTTTGTAGGAAA
CATGTCAATGGTGCAAAATTGTGGTTTGTATACATATTCATTTTAACTCC
TTACATTGGAATATTTCAGTGTGCAAAGTTGCATTTCACTCTAAGAATTT
TTACTTCAAGTAACAGGTGACAACTCTCTTGATCAGCAGATGCCATCAGG
TAACTTCTACTGGAATAAGATATAAATTTGAAAAACAGAATTAATATCTA
TATACTTTTGCAAATTCAAAGGAAGATAATTTTTATAGACTAAATTTGGA
GGTAGACTGCACACAAATTAGCAGTAACAAAGGGCAAACAGAAATATTAA
AGGCAGCCTACATCGTGTTCCCTGTGACTAACAGAATATTATTTTAAGGC
TTTGTTGCTGTGGTGATGGTCTCATATGTCCCTCCTCATCCAAAAACCCA
CGCAAAGTTTTTTCCTACAGGGGAAAATAAATTTTATATTAAAAAGTCTT
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_c17.g1 MSMg01no389_c17.g1 CHROMAT_FILE:
MSMg01no389_c17.g1 PHD_FILE: MSMg01no389_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:41 2005
         (483 letters)



>mm_chr15_44915394_44916276
          Length = 883

 Score =  911 bits (471), Expect = 0.0
 Identities = 480/483 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctgtgttggttccaggcattgatttcaggtaactgggcttagtggcaagagcctatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctgtgttggttccaggcattgatttcaggtaactgggcttagtggcaagagcctatac 260

                                                                       
Query: 61  tcactgagccatctttgcagaatcttgtatagtttgccaacacatgtgactgttctctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tcactgagccatctttgcagaatcttgtatagtttgccaacacatgtgaatgttctctaa 320

                                                                       
Query: 121 aaaatgttaagatctgctgtaccatgaacatgtaatctgtgatctgcttttatatacatt 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 aaaatgttaagatctgctgtaccatgaacatgtaatctgtgacctgcttttatatacatt 380

                                                                       
Query: 181 gttattgcttaacaaacctaagctagttcattttgtaggaaacatgtcaatggtgcaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttattgcttaacaaacctaagctagttcattttgtaggaaacatgtcaatggtgcaaaa 440

                                                                       
Query: 241 ttgtggtttgtatacatattcattttaactccttacattggaatatttcagtgtgcaaag 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtggtttgaatacatattcattttaactccttacattggaatatttcagtgtgcaaag 500

                                                                       
Query: 301 ttgcatttcactctaagaatttttacttcaagtaacaggtgacaactctcttgatcagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgcatttcactctaagaatttttacttcaagtaacaggtgacaactctcttgatcagca 560

                                                                       
Query: 361 gatgccatcaggtaacttctactggaataagatataaatttgaaaaacagaattaatatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatgccatcaggtaacttctactggaataagatataaatttgaaaaacagaattaatatc 620

                                                                       
Query: 421 tatatacttttgcaaattcaaaggaagataatttttatagactaaatttggaggtagact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatatacttttgcaaattcaaaggaagataatttttatagactaaatttggaggtagact 680

              
Query: 481 gca 483
           |||
Sbjct: 681 gca 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)