BAC Information

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BAC

Clone NameMSMg01-389E12
Chromosome15 (Build37)
Map Location 95,029,295 - 95,029,731
singlet/doubletsinglet
Overlap genenone
Upstream geneD630010B17Rik, Adamts20, Pus7l, Irak4, Twf1, Tmem117, LOC100043315
Downstream geneNell2, Dbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329, D030018L15Rik, LOC100043335, EG667869
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389E12.T7 (MSMg01no389_e12.b1)MSMg01-389E12.TJ (MSMg01no389_e12.g1)
ACCAG491575AG491576
length770741
length of high quality
(start - end)
128 (184 - 311)477 (84 - 560)
definitionCHROMAT_FILE: MSMg01no389_e12.b1 PHD_FILE: MSMg01no389_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:50 2005CHROMAT_FILE: MSMg01no389_e12.g1 PHD_FILE: MSMg01no389_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCTATAATTTGAGGCCGCTAAAAGAAACACTACTGCGACACCAGCGG
CGGAANNCNTNAAGTCCCCCCAACCAACATATTCTCTTTTATGGAATGTG
GACTAGAATAGGGGTTGAAGAGATGACTCAGTGCTTCATGGCCTGGGTTA
CTCTTGCTGAGAACCCGGGCTTGGTTGCCTATAACCACATGGTAACTCAC
TACTATCTCTACCTCCAGTTCCAGGGGACCCAAGACACTCTTCTGACCTC
AGTGTACACCAGGCACTCGAGTAGCACACAGATGTACACAGGCAAAAGAC
TAACACACATTTACAAAAATTTTCTTGGTAGTAATGGTTGTTAAATAAAA
TTATTTTTAGATAATATTCTAGCTTGCAACTTAAGGAATTTTGACATTAA
CTACTTACCTCATTAATTAATGTTCTGCACGCATGTGTGCGCTGTGTGTA
CTTGCTTTGCTCACTACGGGACATGGCTCACTCGCGTCGTCCACAGGACA
ATCTTGACCATCACCTCTTTCCGCCCTCCGCCCGCCTCCGGATATCCGCC
TCTCCGTCTTACTCTTGCTGTCCTCCCCTTCTCCACCCCTTAATGATCCA
TCCAGCCCACCCGTCGTCATTTATCCCGCTCTCCACTTTTTCCACACCCC
CAACCCCCCTATTCCCCCGTCGCCCCTCACCGCCCCCTTTCCCCCCCTTC
CGTCTCCCCTCACATCCCTTACTCCCCTCGCGTATTCCCCCCCCTTTACC
CCCCCACTCTTCACCCCTTC
CCCCCCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTCCCGCGAACATTCCCATTTATAGAATGAG
TCATCAGAATATTTGTTTCGATGTGAACTAGTTATGGCTGAAATGGAGTT
ATTTAGAAGCCCCGAGTGAGTTGCAAGAGAATGGCCTCCATAGACAACAG
ACTAAAAGACAAGTTGACTAAGAAAGAAGATTGGAAGACTTGTCAGTAAA
GACTCGGATCCTTGAGGCCACTTATCTTTTGGAAACAGGCAAGAATCAAA
GGAAGTTAAGAATGTGTTTTAGAGATGTGGTTGNTTGAATATGCTTGGCC
CATGGGAAGTGGCACTATTATGAGGTGTGGCCTTGTCAGAGGAGGTGTGG
CCTTGTCAGAGGAGGTGTGGCCTTGTCAGAGGAGGTGTGTCACTGTGGAG
GTGGGGCTTTAAGGTCTCTTATATATGCTTAAGTCTGGCCAGTGGAATGA
GAGCTTCCTCCTGGCTGCCTGTGAAAGTCAGTTCCCTTCTGCTGTCTGCT
GATCAAGATGTAAAGCTGTTTGGCTCCCTCCGCACCATGTCTGCCATGCT
CCCTGCCCTGACATTAATGGACTAAATCCCTGGGACTCTAAGTCCAGCCC
CAATAAATGCTTTCTTTTTTTATAAGTTCCCCTGGCCATGATGTCCCCTT
CCCAGCTTGGGAACCCCTAATCTATAATTTTTATCGCCGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_e12.g1 MSMg01no389_e12.g1 CHROMAT_FILE:
MSMg01no389_e12.g1 PHD_FILE: MSMg01no389_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:50 2005
         (477 letters)



>mm_chr15_95029095_95029971
          Length = 877

 Score =  688 bits (356), Expect = 0.0
 Identities = 427/477 (89%), Gaps = 40/477 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccatttatagaatgagtcatcagaatatttgtttcgatgtgaactagttatggctgaaa 60
           |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 201 cccatttatagaatgagtcatcagaatatttgtttcaatgtgaactagctatggctgaaa 260

                                                                       
Query: 61  tggagttatttagaagccccgagtgagttgcaagagaatggcctccatagacaacagact 120
           ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 tggagttatttagaaaccccgagtgagttgcaagagaatggcctctatagacaacagact 320

                                                                       
Query: 121 aaaagacaagttgactaagaaagaagattggaagacttgtcagtaaagactcggatcctt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  
Sbjct: 321 aaaagacaagttgactaagaaagaagattggaagacttgtcagtaaagactcagatccaa 380

                                                                       
Query: 181 gaggccacttatcttttggaaacaggcaagaatcaaaggaagttaagaatgtgttttaga 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaccacttatcttttggaaacaggcaagaatcaaaggaagttaagaatgtgttttaga 440

                                                                       
Query: 241 gatgtggttgnttgaatatgcttggcccatgggaagtggcactattatgaggtgtggcct 300
           |||||||| | ||||||||||||||||||||||||||||||||||||             
Sbjct: 441 gatgtggtggtttgaatatgcttggcccatgggaagtggcactatta------------- 487

                                                                       
Query: 301 tgtcagaggaggtgtggccttgtcagaggaggtgtggccttgtcagaggaggtgtgtcac 360
                                      |||||||||||||||||||||||||||||||||
Sbjct: 488 ---------------------------ggaggtgtggccttgtcagaggaggtgtgtcac 520

                                                                       
Query: 361 tgtggaggtggggctttaaggtctcttatatatgcttaagtctggccagtggaatgagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tgtggaggtggggctttaaggtctcttatatatgcttaagtctggccagtggaatgagag 580

                                                                    
Query: 421 cttcctcctggctgcctgtgaaagtcagttcccttctgctgtctgctgatcaagatg 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 cttcctcctggctgcctgtgaaagtcagttcccttctgctgtctgctgatcaagatg 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)