BAC Information

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BAC

Clone NameMSMg01-390D05
Chromosome15 (Build37)
Map Location 94,115,959 - 94,116,372
singlet/doubletsinglet
Overlap geneAdamts20
Upstream geneYaf2, Zcrb1, Pphln1, LOC627623, Prickle1, Zfp42-ps1, LOC100042627, LOC100042631, D630010B17Rik
Downstream genePus7l, Irak4, Twf1, Tmem117, LOC100043315, Nell2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390D05.T7 (MSMg01no390_d05.b1)MSMg01-390D05.TJ (MSMg01no390_d05.g1)
ACCAG492272AG492273
length766760
length of high quality
(start - end)
---415 (77 - 491)
definitionCHROMAT_FILE: MSMg01no390_d05.b1 PHD_FILE: MSMg01no390_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:02 2005CHROMAT_FILE: MSMg01no390_d05.g1 PHD_FILE: MSMg01no390_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTCTAAATTTGGGGGGTTAATAGANNTATATAGTTTTTAGGAACGCG
GAATTCTTTGTGTAGTTCTGACACCCCCTTTTTAATGGGGTTATTTGATT
TTCTGAAGCCACCTTCTTGAGATCTTTATATATGTGGGATATTAGACCCC
TATCTGATATATGATAGGGAAAGAGCCTTTCCCCATCTGTTGGGGGGCTT
TTTGTCTTATTGAGGGTGTCTTTTGCGTTGCGGAAACTTTGGAGATATAT
TAAGGCCCCTTTGGCCAATCTCCAACCTAACGGACACAGGCCTTGGCGGT
CCGGTTCAGAAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCAGCGTTTCTGGTTTTATGTGAAGNTTCCTG
ATCCACTTTAGATTTTGACCTTACCACCCAGGAAATAACCTTGGGGTCCG
AATTTGGATTCCTTCCCCCCGGAAAAACCCACCCCCTTTGGGGTCCAGCC
CCCCCCCTTTGGGGGAAAAAAGGCGGGGTTTTTCTTTCCCCCGGGGGGGG
AGGGTTTTTAAATCCCCCCTTTGGCCCAAAAACCCCCGCCGGCCCCCTCG
GGGGCGTCCGGCTTCCATTTCTTCGGAGGCCCCCCCCCCTCTTTTCCATC
GGGGGCCCCCCCCTTTCCCCCGTGTTTTATTCCAACCCCCACCCTCTTCT
CGTTTTGTCCTCTCCCNACCCCTCTGTCTCTCCTTCTTCCACTTCTCTTT
CTTTCCTGGTGCGCTG
NCCCGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCATCCCCCCGCCTCCTCGATAG
AGTTCGGACTTTACAGTTAGTACCACTCCACCCCACGGCATGAAGAACAA
ACTTGCAAGGACCGTGCACATAGGAAAGCATTCTTTGCTTTTCTCCATTG
CTTTTCCAGTGTTCAACATCATGTAAGAAAAAAGAGACCTATCGGCTGGT
GAAATGTGTGAATGAGCAAAACGTACAAGCCAATGAAAGTCTCTGTGACC
CTTTAACGAAACCCCTTTCAATCAAAACATGCAGGAATCCTCACTGCAAG
TACTCGGTGGTTACAGGAGACTCGTCGCAGGTAAGGTCATCCTGGTCTCT
TTTCCTGTCGCTGTCATAAAACACCCTGGGAGAAAAAGAAGTGTCTTTGA
TGAGGGGTTAGAGCTTCACTTATCTGTGGGTGTAACATACGGATTTAGAA
TAGAGTTGGGAATTAAACTGGATCAGGAGTGTAAGTTATCCTCTAGGGCA
GCAAGCCTCAACCTGTGGGTTGCAAACGCGTTTGGGTTAAAAGAACCTTT
CTCAGGGGTCGCCTAAGGCCTTCTGTCTACCCCATATTTATCTTAACATG
CCTCACACTAAAACAAACATCACCTATACATTACCACTGCATAAAATTTT
CGTGGCTTGGAATCCCCCCCCCTATGCACGAATCATTATAACAGCCCTGT
GTCTCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_d05.g1 MSMg01no390_d05.g1 CHROMAT_FILE:
MSMg01no390_d05.g1 PHD_FILE: MSMg01no390_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:02 2005
         (415 letters)



>mm_chr15_94115817_94116631
          Length = 815

 Score =  731 bits (378), Expect = 0.0
 Identities = 405/414 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcatccccccgcctcctcgatagagttcggactttacagttagtaccactccaccccac 60
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctcatccccccgcctcctcgctggagttcggactttacagttagtaccactccaccccac 497

                                                                       
Query: 61  ggcatgaagaacaaacttgcaaggaccgtgcacataggaaagcattctttgcttttctcc 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 496 ggcatgaagaacaaacttgcaaggaccgtgcacataggaaagcgttctttgcttttctcc 437

                                                                       
Query: 121 attgcttttccagtgttcaacatcatgtaagaaaaaagagacctatcggctggtgaaatg 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 436 attgcttttccagtgttcaacatcgtgtaagaaaaaagagacctatcggctggtgaaatg 377

                                                                       
Query: 181 tgtgaatgagcaaaacgtacaagccaatgaaagtctctgtgaccctttaacgaaacccct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 376 tgtgaatgagcaaaacgtacaagccaatgaaagtctctgtgaccctttaacgaagccgct 317

                                                                       
Query: 241 ttcaatcaaaacatgcaggaatcctcactgcaagtactcggtggttacaggagactcgtc 300
           ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ttcaatcaaaaaatgcaggaaccctcactgcaagtactcggtggttacaggagactcgtc 257

                                                                       
Query: 301 gcaggtaaggtcatcctggtctcttttcctgtcgctgtcataaaacaccctgggagaaaa 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gcaggtaaggtcatcttggtctcttttcctgtcgctgtcataaaacaccctgggagaaaa 197

                                                                 
Query: 361 agaagtgtctttgatgaggggttagagcttcacttatctgtgggtgtaacatac 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 agaagtgtctttgatgaggggttagagcttcacttatctgtgggtgtaacatac 143


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)