BAC Information

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BAC

Clone NameMSMg01-390M07
Chromosome15 (Build37)
Map Location 40,312,068 - 40,312,351
singlet/doubletsinglet
Overlap genenone
Upstream geneRims2, Tm7sf4, Dpys, Lrp12, LOC100039130, LOC670013
Downstream geneLOC664872, Zfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390M07.T7 (MSMg01no390_m07.b1)MSMg01-390M07.TJ (MSMg01no390_m07.g1)
ACCAG492701AG492702
length743741
length of high quality
(start - end)
286 (80 - 365)475 (79 - 553)
definitionCHROMAT_FILE: MSMg01no390_m07.b1 PHD_FILE: MSMg01no390_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:47 2005CHROMAT_FILE: MSMg01no390_m07.g1 PHD_FILE: MSMg01no390_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACTTATAATTTGCGGNCGCTATACGATCACTATTTTCAGACAATCCGC
GGAATTCTGCCCTTTCCCCTCTTTGCTGCCAATATATAGGAAATACAGCT
TACCCTATAATGTGATGTAAACCATGATCTTGACTTTTATAGTAAATTGT
TCAAGATTTAATTACAAATTTTCATTCTTGAATTTCCTAGTTTATTTATT
CTTGAGAATTTCATAACTGTATATGATGTGTTTTGGATCACAGCTAGCTC
TTACTCCACTCTCCAACTCTTCTCATGCCCCCTCCTCATGTCCCCTTCAG
ACTTTCTCTCTTGGTTTTTTATCTTTTTTCACTGAGCCTAATTAGTGCTG
GCAATGTACCCAATGGTATACGACCCTCTTCTGGAACACAGTAAATCTGC
CAAAGGGCTGCATCCCTAATGAAAACTGAATATTCCTTCCTCTGGACAGC
CATTGCCTGCCAATAACTCTCAGCTAAGAGTGAGGCTTGTAAATCCCTAC
CCCATCCATGCTAGACTGCAGCCAGGCTTAATTTCCTGTAGGCCTTCTGC
TGCCAACTACAGATGCTCTGATCTCAAGCAATGCCCTTGCCCCGTGCACA
ACACACCGTTTTATAGCACCTTCCTGTCCCCTGGCTTTCTCCCGCCCCTC
CCGCGGATTTTCCTTGGCCCCCTGCACACCGCCCCCCGCGGCCATTGCAC
CCCCTACCAACAGCTTCGATAATTTCTACACCCCCCCTCATCT
NACCGATGATGTGGGAGGCCTGGNGGCGCCTGTTTTCTTACCGTGGGTGA
ACTATAGAAGTTTCCAGCAACCGCTGGNAAATTTTCTGGGCAGCTTCTTT
TGAGAAGGCTATTACATATTGCATATAGAAATATTACATCCATAAAAATG
TTGTAGAGAAAGTTATTAAGTATTATTTAACTTCTTTAGTTTAGGTAGCT
ATTCATCTGCCTAACATGTCTCTTTACCCCATGCACACTTTACAGTTAAG
ATAGCTAAAGTATTTGTCCAAGTTGCCTAACATGTTAAGGTTATGGATGC
AAAATTATTTTATAGCTTGTTTTTTTTCCTTCACTATTCACATTTAAGTA
TCAGTAATGCCTTTTTCATTTTGAGTGTTGTGAATTTGTATCATTTCCGT
TTTTCTTGAGTAGCCTAGATAGAGGCTCATCAGTGTTAGGTTTCCCCACA
GAGAGTTAGTTTTGGGTTTCATTATAGTTTGATATTTTCTGCTATAATTT
ATTGTTTATTATTTTGCTTATTCTATGCTTAATTTTTTTCTCTAAGGAAG
AACATAAGTAATTGATTTCGAAGTTCTAAATCTCTTCTGTGCTTATTGCT
ATGAATTTTCCCCTGAATACATTTCCCCGATGATTCTTAGGTTCTAATAA
GTTGTATTTTTTTTATTTTCGTTTAGGAATGTTTTTCCTTTCTCTCTCCT
GGTTCCCTTGGCGGCCCCTTCTTCCCCCCCTATAATAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_m07.b1 MSMg01no390_m07.b1 CHROMAT_FILE:
MSMg01no390_m07.b1 PHD_FILE: MSMg01no390_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:47 2005
         (286 letters)



>mm_chr15_40312037_40312722
          Length = 686

 Score =  511 bits (264), Expect = e-149
 Identities = 279/284 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatatataggaaatacagcttaccctataatgtgatgtaaaccatgatcttgactttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 caatatataggaaatacagcttaccctataatgtgatgtaaaccatgatcttgactttta 256

                                                                       
Query: 61  tagtaaattgttcaagatttaattacaaattttcattcttgaatttcctagtttatttat 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 255 tagtaaattgttcaagatttaattacaaattttcgttcttgaatttcctagtttatttat 196

                                                                       
Query: 121 tcttgagaatttcataactgtatatgatgtgttttggatcacagctagctcttactccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tcttgagaatttcataactgtatatgatgtgttttggatcacagctagctcttactccac 136

                                                                       
Query: 181 tctccaactcttctcatgccccctcctcatgtccccttcagactttctctcttggttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 tctccaactcttctcatgccccctcctcatgtccccttcagactttctctcttggttttt 76

                                                       
Query: 241 tatcttttttcactgagcctaattagtgctggcaatgtacccaa 284
           |||| |   |||||||||||||||||||||||||||||||||||
Sbjct: 75  tatcataactcactgagcctaattagtgctggcaatgtacccaa 32


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)