BAC Information

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BAC

Clone NameMSMg01-390O18
Chromosome15 (Build37)
Map Location 86,908,382 - 86,908,788
singlet/doubletsinglet
Overlap genenone
Upstream geneBC021523, Cerk, LOC100042300, Tbc1d22a, LOC100042309
Downstream geneAW049604, LOC100042329, LOC100042340
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390O18.T7 (MSMg01no390_o18.b1)MSMg01-390O18.TJ (MSMg01no390_o18.g1)
ACCAG492818AG492819
length798745
length of high quality
(start - end)
164 (81 - 244)408 (80 - 487)
definitionCHROMAT_FILE: MSMg01no390_o18.b1 PHD_FILE: MSMg01no390_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:59 2005CHROMAT_FILE: MSMg01no390_o18.g1 PHD_FILE: MSMg01no390_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTAGTCCATTGCCCAAAGTCACCCACACTCATGATCAGTTT
GTCTTTCTTAATTATAACTCCCTAGAAACATCTTCACAGAAACACACAGA
GGTATGTCTCCTAGAAGATTCCAAATCTAATCAAGTTGACATAGAGGAAG
TGAATGCTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTCCCTC
CTCCCTTTTTTTCTCCCCTTCCCCTCCTCTTCCCCTCTTCTCCCCCCCCC
TCCTCCTTTCTTTCNCNCCNCTTTTCTTCTTTTNNCCCNCNCNCCCNCCC
CCCCCCCCCNNTTTTTTTTTTCCCCCCCTCTCGGGGGGGGGGGGTTCTCT
CCTCTTTTTTCTTGCCCCCCCCCCCCCGGTTTCCCTTTGCCTCTTCCCCT
CCTCTTCTTTCCCTTCTCCCTCCTCCTCCTGCCCTTTCCCCTTCCTCCTC
TCCCCTTCTTTTTTCCCCTCCCTCGCCTCCCCCTTTCTCCCCCCCCCCTC
CTCCCCTGCGCCCTTCCCCCCCCGACTCTCCCGCCTCCCCCCCCCTCCTC
TTTTCCTCTCTCCTCCTTCCTCGTTTTCCCCCCTCCCCCCTTTGCTTCTC
CTCCTTCCCCTCCTCCGTCTCCCCGTTCCCCTTTTCTTTTTTCTTTTTCT
CTCCCCCTCTTCTCCTTCTCCCGTCTCCGCGCCTGCTTTCCCCTTCCCTT
CCCCTCCTTCCCTCCNCTTCCTTCCTTTCTCACCCCGTTTTCTATTCG
NNNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTCTGGGTTGCTTACTACA
GAAAATTCCTGTTTCCTGGGATGAAAGAGAAGACTGTGGCAGGCGCTCCC
ATGAAGCCTTGCCTGCGAGTGGGGCATGCTGGGTAAGCTGTTTGCTCTGT
GATTGGCTGGGAGGGTCAATCGCTCCACAGTCAATGAGACCACATTCGTC
TAAACATCAAGATCATAGAAGAGAAAGTGACAACAGAACATTGAGGATGG
TGACTGTTTCCGACAATGGATGTGGGATTTCTTCATTTACTAAGGCGCTT
CCAGGTTTCGCTCTTGGGGGTAGCTCATGGCACACACACTTTACACATAT
CTTGTTATATTTGCCCTTAAATGATCATTCTGTTTGATATATTTAGTTAC
TTGTCTCGTTGCTGTGGGGGGAAAAAGGGGGTGGGGGGNNNNNNNNNNNN
NNCNNNNNNNNNNNNNNGNNTNNNNNNGNNNNNNNNNNNNNNNNNNNNNN
NNTTTNNNTNTTTTTTGTTTTTTTTTTTTTTTTTTGTTTTTTGTTTTTTT
TGTTTTTTTGGGTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTCTTTTTGT
TTTTTTTTTTTTTTTTTTTGTGTTTTNTTTTTTTTTTTTTGTTTTTTTTT
TTTCTTCTTTNGTGTTCTTGTTTTNTTTTTGCTTCCTTTCTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_o18.g1 MSMg01no390_o18.g1 CHROMAT_FILE:
MSMg01no390_o18.g1 PHD_FILE: MSMg01no390_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:59 2005
         (408 letters)



>mm_chr15_86908182_86908988
          Length = 807

 Score =  712 bits (368), Expect = 0.0
 Identities = 398/408 (97%), Gaps = 1/408 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtctgggttgcttactacagaaaattcctgtttcctgggatgaaagagaagactgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtctgggttgcttactacagaaaattcctgtttcctgggatgaaagagaagactgtgg 260

                                                                       
Query: 61  caggcgctcccatgaagccttgcctgcgagtggggcatgctgggtaagctgtttgctctg 120
           |||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 261 caggcgctcccatgaagccttgtct-cgagttgggcatgctgggtaagctgtttgctctg 319

                                                                       
Query: 121 tgattggctgggagggtcaatcgctccacagtcaatgagaccacattcgtctaaacatca 180
           |||||||||||||||||||| | ||||||||||||||| |||||||| ||||||||||||
Sbjct: 320 tgattggctgggagggtcaaccactccacagtcaatgaaaccacattagtctaaacatca 379

                                                                       
Query: 181 agatcatagaagagaaagtgacaacagaacattgaggatggtgactgtttccgacaatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 380 agatcatagaagagaaagtgacaacagaacattgaggatggtgactgtttctgacaatgg 439

                                                                       
Query: 241 atgtgggatttcttcatttactaaggcgcttccaggtttcgctcttgggggtagctcatg 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 440 atgtgggatttcttcatttactaaggcgcttccagatttcgctcttgggggtagctcatg 499

                                                                       
Query: 301 gcacacacactttacacatatcttgttatatttgcccttaaatgatcattctgtttgata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcacacacactttacacatatcttgttatatttgcccttaaatgatcattctgtttgata 559

                                                           
Query: 361 tatttagttacttgtctcgttgctgtggggggaaaaagggggtggggg 408
           |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 560 tatttagttacttgtctcgttgctgtgggggggaaaagggggtggggg 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 807
Length adjustment: 9
Effective length of query: 399
Effective length of database: 798
Effective search space:   318402
Effective search space used:   318402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)