BAC Information

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BAC

Clone NameMSMg01-392A19
Chromosome15 (Build37)
Map Location 48,476,752 - 48,658,260
singlet/doubletdoublet
Overlap geneCsmd3
Upstream genenone
Downstream geneEG665146, LOC100039600, LOC100039539, LOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392A19.T7 (MSMg01no392_a19.b1)MSMg01-392A19.TJ (MSMg01no392_a19.g1)
ACCAG493677AG493678
length775795
length of high quality
(start - end)		597 (47 - 643)164 (78 - 241)
definitionCHROMAT_FILE: MSMg01no392_a19.b1 PHD_FILE: MSMg01no392_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:27 2005CHROMAT_FILE: MSMg01no392_a19.g1 PHD_FILE: MSMg01no392_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,657,667 - 48,658,260)(48,476,752 - 48,476,914)
sequence
NCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATGCTTGGCGGAACTAAAACACAGAGACCTCAAAGACCATCCT
CACAGTGGCCAACAAGGCTACGCCCACTCAAACATGGCCACACCTCCTAA
GAATGCCACTCCCAGTGGGCCAAGCATTCAAACACAAGAGTCTAGGGGTG
CCAAATCTATTCAAACACAGCGGCTATGTAAAGGAGTGAAGGTGTAAATT
CCTATTTGTGTGTAGGGAGACAAGGACAATCCATCACTAATATCTTACCT
CTGGGGCACCTAGGTGGGAAGAAATGGAAGAAGAACCAAGGCCAAGATAT
TATGAGGAAGAAAAAGTCTCCCTTATTCAGTGTATTTGTTCTTATCAGAT
TTATTTCATTTCACACAGCAGTTCAACACACTGGATTCACAAACATGGAG
AGGGAAAGATGTTTTATCATTTAGTACAACATGCAACCTAAGTTAAAATC
ACAATGATACAGCACATGAGTTTTCAGTTAAACATTCTTATAACACTGTG
TTGACAGTCAAGTATTTAGCTTACCAAGAATTTAATGGAAGAATGTTCCC
TCTGTTGGCAGAAACATAAAGAAGCACAGAGACGGGAAGATGTGATGTTC
CCAAGTTATCATGATATACCAGAATATTATAGGAATCTCCAAGATTGCAG
AAATGGCTTTCTAGCTCATGGTCCAAAACACTATTAAGGAATAAATTATT
TTCTCCTATATTATGAAATTATGTG

CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAACCTCATCTATTATTTCTG
AGTTGAATATTTCCAATGAATATATATATAAAATATAAATGTGCCTGTTG
CTACAGATAATATTATACTGAGACTATTATAATGAAAGGAGGTTTTACTG
ATTGAGTCATATACCTTAAAGTAATTATCACAGTAAATGGCGCGTAATTT
TTTCTTGGGGTAGCCTATAGTTCTGGGATTTAAACATTCTTATTTGTGGG
TGGCCCNTTCCCCANCGCCCNNCCAAAATACATACAACCCATTCTTNNNN
ATCCCCCCTTTCCCCCCCCTTCTCTTCCCCTCTTCTCCTCCCTCCCTCTC
TCCTTTTTCTTCCCTCCCCCCTCTTCCCTCCTCTCCCCTCTCCTCCTTTC
CCCTCGTTTTCGCCCCCCTCCCCTTGCCTTTTACCTCTCTCCCCCCCCCC
CTCCATTCCCTCTCTATTTCTCTTTCTCGCCCATCTCCTTCCCTCTCCCT
CCCCTCCCTTCTCCCCTTTTCCTCCTCCCCCCCTCTCTCTTTCTCTTCTC
CCTTCTTTCCCTTTCCTCCCCCCCCTTTTTCCCCCCCCCCCCTTCTTTTA
TTCCCCCTCCCCTCTCCCTCCGTCCTCCGTTCGCTCCCTTCTCCCCTCCT
TCCCCCCTCCCCTCCCTCTCCTTTTCCCCCCTCTTCTCCCTTTTTTCTCC
TCCCCTCCTCCCCCCCTTTCTTCCCCCCCTTATCCCCACCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_a19.b1 MSMg01no392_a19.b1 CHROMAT_FILE:
MSMg01no392_a19.b1 PHD_FILE: MSMg01no392_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:27 2005
         (597 letters)



>mm_chr15_48657297_48658293
          Length = 997

 Score = 1033 bits (534), Expect = 0.0
 Identities = 579/594 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatgcttggcggaactaaaacacagagacctcaaagaccatcctcacagtggc 63
           |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 964 ggaattccatgcttggtggaactagaacacagagacctcaaagaccatcctcacagtgac 905

                                                                       
Query: 64  caacaaggctacgcccactcaaacatggccacacctcctaagaatgccactcccagtggg 123
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 caacaaggctacacccactcaaacatggccacacctcctaagaatgccactcccagtggg 845

                                                                       
Query: 124 ccaagcattcaaacacaagagtctaggggtgccaaatctattcaaacacagcggctatgt 183
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 844 ccaagcattcaaacacaagagtctaagggtgccaaatctattcaaacacagcggctatgt 785

                                                                       
Query: 184 aaaggagtgaaggtgtaaattcctatttgtgtgtagggagacaaggacaatccatcacta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 aaaggagtgaaggtgtaaattcctatttgtgtgtagggagacaaggacaatccatcacta 725

                                                                       
Query: 244 atatcttacctctggggcacctaggtgggaagaaatggaagaagaaccaaggccaagata 303
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 724 atatcttacctctggggcaactaggtgggaagaaatggaagaagaaccaaggctaagata 665

                                                                       
Query: 304 ttatgaggaagaaaaagtctcccttattcagtgtatttgttcttatcagatttatttcat 363
           |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 664 ttatgaggaagaaaaagtctcctttattcagtgtatttgttcttatcagatctatttcat 605

                                                                       
Query: 364 ttcacacagcagttcaacacactggattcacaaacatggagagggaaagatgttttatca 423
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ttaacacagcagttcaacacactggattcacaaacatggagagggaaagatgttttatca 545

                                                                       
Query: 424 tttagtacaacatgcaacctaagttaaaatcacaatgatacagcacatgagttttcagtt 483
           |||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 544 tttactacaacatgtaacctaagttaaaatcacagtgatacagcacatgagttttcagtt 485

                                                                       
Query: 484 aaacattcttataacactgtgttgacagtcaagtatttagcttaccaagaatttaatgga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 484 aaacattcttataacactgtgttgacagtcaagtatttagcttaccaagaatttattgga 425

                                                                 
Query: 544 agaatgttccctctgttggcagaaacataaagaagcacagagacgggaagatgt 597
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 424 agaatgttccctctgttggcagaaacataaagaagcacagagactggaagatgt 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no392_a19.g1 MSMg01no392_a19.g1 CHROMAT_FILE:
MSMg01no392_a19.g1 PHD_FILE: MSMg01no392_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:27 2005
         (164 letters)



>mm_chr15_48476552_48477115
          Length = 564

 Score =  315 bits (163), Expect = 7e-91
 Identities = 163/163 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaacctcatctattatttctgagttgaatatttccaatgaatatatatataaaatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaacctcatctattatttctgagttgaatatttccaatgaatatatatataaaatata 260

                                                                       
Query: 61  aatgtgcctgttgctacagataatattatactgagactattataatgaaaggaggtttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgtgcctgttgctacagataatattatactgagactattataatgaaaggaggtttta 320

                                                      
Query: 121 ctgattgagtcatataccttaaagtaattatcacagtaaatgg 163
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgattgagtcatataccttaaagtaattatcacagtaaatgg 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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