BAC Information

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BAC

Clone NameMSMg01-392L24
Chromosome15 (Build37)
Map Location 32,262,998 - 32,263,408
singlet/doubletsinglet
Overlap geneSema5a
Upstream gene5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231, Tas2r119, 0610007N19Rik
Downstream geneLOC100040962, Sdc2, Pgcp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392L24.T7 (MSMg01no392_l24.b1)MSMg01-392L24.TJ (MSMg01no392_l24.g1)
ACCAG494211AG494212
length794492
length of high quality
(start - end)
411 (75 - 485)---
definitionCHROMAT_FILE: MSMg01no392_l24.b1 PHD_FILE: MSMg01no392_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:23 2005CHROMAT_FILE: MSMg01no392_l24.g1 PHD_FILE: MSMg01no392_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTACATCTTTATCCACAGGTAGCAGGAGAGCCAGTGACCC
AGCTTGAGCTTCTGGCATGTCAAAGCTTACCCTTTCTAGTGATGCACTTC
CTCCAACAAAGCCCCTCCTACTTAATAAGGCCATACCTCCTAATAGTGTC
ACTTCCCTATGGAACTATGGAGGCCATTTTCAAACCATCCCAATATGGTA
CTCCCAATTTCTCTTTTAAAGAGAACCCAGCATGACTTTGATCTCAAGTA
GTCCTGAGCTATAATTACAAATTAAAATGCCAGTCTCGATCCTCCTGTGA
AATGCAATTGAGGCTGAGTCAGAGTGGAGATCTGAGATAAGGTGCTTTGC
TTGGAGAGAGGGTACATTGTCAAGTGCTATAGAAAGATGACTGTGACTCA
GTAGCCACTCCCTCTAAAGCTCCCAGACTTTGGTGATCAGCAGGGACAGC
TTTGGAATTTCTGCCTAGCCTCCAGCCAAGGGCAGTGATTTCTCCTTGAC
AATCATGCCTCTGTTCAAGACTATTGGCGTTGGACAGAAAGAGACTCCCT
CTGATGATTCCCCCCCGAAGGAAGACTCCTTCTGAAAGGAGACAGCCTCC
CAAGGGGCCCCCCTTGGAGGGCAAAACCCCTTGTAGGGAAAAACCCCCCC
CCCCTGGTTAATTTAAAAGGTAATTTTTTTCTTTTAGAAAATGGGGGAAA
CCCCCCCCGCCCGTGGTGAGGCCAACACCCTAACTTCCCCCCCG
GGGGGGGGTTCGCTGCACCCCTCCCTCGAAACGTGTGTGAAAACTTCCAT
ACCCTCGTCTAGCGCCGGGATCTGACGCCGCCCACCAACCGGTCGACGCC
TCGTACTTTAACCCTTATTACGTATGGCGTGGGGGGGGCGGGGAGCGGGT
GCGGAGGAGNNNNNNNCGTATGAACGGGTAGCCCGGXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCACATTTG
TTTTGAGGCAGAGAGGACCATTTCTAGCACATCTTTCTCTCTTTCAAGGA
TCCGGGGAGGAAAGGCTATCTGGAAGCGTAATAAAAGAAAACTCCGAAAA
CTGATTTTTAAAGAAGGGGGGGATTTAAAAAATCCAAAGGGGGGGGAACC
CCAAAAATTAAAAGGGCCCCAACCTAAAAAGGGGGAAGGGGCGGGGGGAA
AAAAAAAAAACGGGGGCCATGTTTTTTTCCACAAAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_l24.b1 MSMg01no392_l24.b1 CHROMAT_FILE:
MSMg01no392_l24.b1 PHD_FILE: MSMg01no392_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:23 2005
         (411 letters)



>mm_chr15_32262798_32263608
          Length = 811

 Score =  787 bits (407), Expect = 0.0
 Identities = 410/411 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaggtagcaggagagccagtgacccagcttgagcttctggcatgtcaaagcttaccctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaggtagcaggagagccagtgacccagcttgagcttctggcatgtcaaagcttaccctt 260

                                                                       
Query: 61  tctagtgatgcacttcctccaacaaagcccctcctacttaataaggccatacctcctaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctagtgatgcacttcctccaacaaagcccctcctacttaataaggccatacctcctaat 320

                                                                       
Query: 121 agtgtcacttccctatggaactatggaggccattttcaaaccatcccaatatggtactcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgtcacttccctatggaactatggaggccattttcaaaccatcccaatatggtactcc 380

                                                                       
Query: 181 caatttctcttttaaagagaacccagcatgactttgatctcaagtagtcctgagctataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatttctcttttaaagagaacccagcatgactttgatctcaagtagtcctgagctataa 440

                                                                       
Query: 241 ttacaaattaaaatgccagtctcgatcctcctgtgaaatgcaattgaggctgagtcagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacaaattaaaatgccagtctcgatcctcctgtgaaatgcaattgaggctgagtcagag 500

                                                                       
Query: 301 tggagatctgagataaggtgctttgcttggagagagggtacattgtcaagtgctatagaa 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 tggagatctgagataaggtgctttgcttagagagagggtacattgtcaagtgctatagaa 560

                                                              
Query: 361 agatgactgtgactcagtagccactccctctaaagctcccagactttggtg 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatgactgtgactcagtagccactccctctaaagctcccagactttggtg 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)