BAC Information

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BAC

Clone NameMSMg01-394F24
Chromosome15 (Build37)
Map Location 7,978,374 - 7,978,592
singlet/doubletsinglet
Overlap geneWdr70
Upstream geneLifr, Egflam, Gdnf, LOC665556, LOC621001
Downstream geneNup155, 2410089E03Rik, LOC100039599, Nipbl, EG666437, LOC100039560, LOC100039633, Slc1a3, EG622770, LOC268781, LOC382969, LOC100039619
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394F24.T7 (MSMg01no394_f24.b1)MSMg01-394F24.TJ (MSMg01no394_f24.g1)
ACCAG495446AG495447
length773768
length of high quality
(start - end)
407 (74 - 480)391 (80 - 470)
definitionCHROMAT_FILE: MSMg01no394_f24.b1 PHD_FILE: MSMg01no394_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:44 2005CHROMAT_FILE: MSMg01no394_f24.g1 PHD_FILE: MSMg01no394_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:44 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCCCTTTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAGATC
CGCGGAATTCTGGGGATTGCTAAGTAACCTCTATCTTAATCTGTTTGCTC
TATCTCTAGGGACATTCCAGAACCATTGCTGGGGCATGGAGGAAGGGGGA
GGCTGGAAACTTGCTAGGGAAGTCTGAAAACTGTTGCTAAGGAAGTCTGG
AAACTGCTGCTCACCCATGTCCTTGTCTTAGGCCAGGTGTCGGGCAGCTC
CTGAGGTCTAGACTTGCCTGGATTTGCGCAGTTCTTGGAAACAGAGATTT
AGGTCTAGTCTCCTGAACTGCCAACTTGATGCCTGTCATAAAGTTAGCCT
GTCTCACTTTTAGAAGGTAAAGACTTGCTGAAGGAAGTGTGTCACTCATG
TCACTCAGGGTAAGTCCTTTGAGTTTCGTGGCCTGGCCCCATTTCCTGTT
TTTTTTCCTCTCTCTTCCTCTGCATCTTGGTCTGCTTTCTATTGCTATGA
TAAAGACCATGACCATCTTTGAGGAAAGGCCAGGCCGGACCTCCAGTCTA
AAATTTCAGGCAGTGACTTGAACGCCCGGTACCCTCATTACCAATTATCC
CTTAAATGCCCCCAAAAATTGTCTTTATGCTTTTCCCTTATAGGTATTTT
CTCCACCATAAGCCCTCTTTTTCTCAAAGAACTCCGGTTTCCCTCCCCTA
CCATATCCTTATCCCCCCCTCTTTTTTGCGTGGGAATCCCTCTACCCGAT
TTTTCCCTTTCTCCTTTTTTCTG
NTTTCTCGAAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGCCAGGGCTTTCATACCT
TAACACAGTGGCCTTCATTGGAACGGTGCCAATTTAGACTCAAAGTATTA
CTAGATATAAGGCTTAGGCTTCGCATACTGTGAGGACGGCAGCAAATGAA
CACAGTGTCATAGAAGGAATTGAGCTGGAAGTTCTTTGGTGGTAGACACT
CAGCTACAAAAAGCACAAGCTTTCAAAATGAAATTGTTTCCATAATAAGA
GGCATAGAGAACTTCCTTCCTCTCTGTCCACCCATACACAGCTAGGAAAG
GTCCCATGAAGATTCAGCAAGAAGGTGATTGGCTGACTGCTCTCCACATA
CACAGTCCCTGCTGGCACCTCGATCCTTAGCCTGTAATCTCCAGGAGCGT
CTAGTGCACTTTTGTTGGTGCCATTTGGTCGGTGGTGTTCGGTTAGGGTA
GCCCAACTTTGCAATGANGGCACTATGGCCTCCTCTGGCCTCTTTTCGAC
CAAATGTTGGCCCCATCTGCTCCTGAAAGAAATCTGGAATGGGCCCCCCT
ACCATTTGCCGATCATTCGCGGTTTGCCCCGATAACCCGGAGCACTGGGA
AGTTCCCAAGGGGGCCCCTTCCAGTATTCTGTGCACCAAAGACTTTTTCA
CCCAAATTGGGCGAGCTACAAATAAGGCCTCCCGGGTACTCCAAAGTCTT
CCTGTGGCCTTTTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_f24.g1 MSMg01no394_f24.g1 CHROMAT_FILE:
MSMg01no394_f24.g1 PHD_FILE: MSMg01no394_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:44 2005
         (391 letters)



>mm_chr15_7978002_7978792
          Length = 791

 Score =  400 bits (207), Expect = e-116
 Identities = 216/219 (98%)
 Strand = Plus / Minus

                                                                       
Query: 173 agctacaaaaagcacaagctttcaaaatgaaattgtttccataataagaggcatagagaa 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 agctacaaaaagcacaagctttcaaaatgaaattgtttccataataagaggcatagagaa 532

                                                                       
Query: 233 cttccttcctctctgtccacccatacacagctaggaaaggtcccatgaagattcagcaag 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 cttccttcctctctgtccacccatacacagctaggaaaggtcccatgaagattcagcaag 472

                                                                       
Query: 293 aaggtgattggctgactgctctccacatacacagtccctgctggcacctcgatccttagc 352
            |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 471 caggtgattggctgactgctctccacaaacacagtccctgctgccacctcgatccttagc 412

                                                  
Query: 353 ctgtaatctccaggagcgtctagtgcacttttgttggtg 391
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ctgtaatctccaggagcgtctagtgcacttttgttggtg 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)