BAC Information

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BAC

Clone NameMSMg01-396G08
Chromosome15 (Build37)
Map Location 68,679,434 - 68,679,927
singlet/doubletsinglet
Overlap genenone
Upstream geneZfat1, LOC100041000, EG665945
Downstream geneEG633752, Khdrbs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396G08.T7 (MSMg01no396_g08.b1)MSMg01-396G08.TJ (MSMg01no396_g08.g1)
ACCAG496984AG496985
length746753
length of high quality
(start - end)
545 (35 - 579)357 (65 - 421)
definitionCHROMAT_FILE: MSMg01no396_g08.b1 PHD_FILE: MSMg01no396_g08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:30 2005CHROMAT_FILE: MSMg01no396_g08.g1 PHD_FILE: MSMg01no396_g08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCGAGAGCATCCGCGGAATTCTAGTAA
TTTCCTTCCTCTTAGCTATGCTTCCTCATGGGAGATGATATCATGGAACT
CCCTGGGGCCAATGGTGATGGTCAGCTTTGGGGACTATAAGAAACAGCAC
TTAAACAGCAGAAGCAACATAACCACTATTGCTGTCTTAGCCAGTAAGAG
CAGACTGTGCACATAGGAATCTATGACTCTTGGAACTGTGGGCCAGTGAC
TAGTAATAGATGGGGAGAGTCCTAATATTGAGAGAGAATGGCAACTGATG
AGGTTTGTTTTCTTTTATATAAGCCAACAATAAAAATAAATAAAAATTTG
GCAAGAACAATTGAAAAACAGTGACCCCTTACCTAATTTCTAGATCTAAG
ATGGCTCATAATTGAGGAACTTCTTCTCTTTCTCACTCTTTCTGTTTTTT
TGCCCCATTTCCTTGTCTTCTGTGTCTCCATTCTCCTCAATGCCAACATG
TCACCACAAGTAAATATAACCAATATTATTTTAATCCTTCCTCAACACAC
TTTGTAGCAAAATGAGTTGGCTAATGGGGATATGAACACACCCCTTGACT
TAAAGAGCAATACTCATAGCAGGAGAAATAAATACAAATATATTCCTTCC
CCTGGAAAAACGATGGGAGGGAAAGTAGATACCACATTTGGTACCTTTCC
CTGCTATGAAAACAATAAGATTAACATCCGCTTTGTCTAGAAAAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACCATATTTTCTGTATCCATTCTTCCATTGTGGGAC
ATCTGCGTTGTCACAAATAAGTCTGCTGTGAACATAGAGGAACATGTGAC
CCTGTGGCATGGTGGGACATCTTTTGGGTATATGCCTAAGACTTTTATAC
CTGGGTTTTCTTTTCTTTTTTTATATTTTTATTATTACGTATTTTCCTCA
ATTACATTTAGAATGCTATCCCAAAAGCCCTCCATATCCTCCCCCCAACT
TCCCTATCTTTTTATTCCCATTTTTTGGCCCTGGCATTCCCCTGTACTGT
GTCATATGAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCTG
ACTACGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGTTCCGGTGT
ACTGGTTAGTTCATAATGTTGTTTGCCCTACAGGGCTGCAGATCTCTTTT
GCTCCTCGTTTTACTCTATTTTCCCTTTTCTGAGGACCCCCCTCAGGTCT
TTCCTCATTTCTGCATTTTCTCCCTTACGTATGTACTTTCTCTTCCCCCT
TCATCCCCCCCTTTTTTCTTCTTGCTTTTCATACTTTTATCCCTTCCTTT
TTTTTTTTTTCCCCCTCTTATCCTCTTTTTTTTCTTTTTTTTTATTGTTT
TTCCTTATTACTCCTCCCCCCTTTTTCTCTTCTTTTTTTTTCTCTTTTTT
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_g08.b1 MSMg01no396_g08.b1 CHROMAT_FILE:
MSMg01no396_g08.b1 PHD_FILE: MSMg01no396_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:30 2005
         (545 letters)



>mm_chr15_68679434_68680378
          Length = 945

 Score =  847 bits (438), Expect = 0.0
 Identities = 480/494 (97%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttctagtaatttccttcctcttagctatgcttcctcatgggagatgatatcatggaactc 67
           ||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttctagtaataactttcctcttagctatgcttcctcatgggagatgatatcatggaactc 435

                                                                       
Query: 68  cctggggccaatggtgatggtcagctttggggactataagaaacagcacttaaacagcag 127
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 434 cctggggccaatggtgatggtcagctttggggactacaagaaacagcacttaaacagcag 375

                                                                       
Query: 128 aagcaacataaccactattgctgtcttagccagtaagagcagactgtgcacataggaatc 187
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aggcaacataaccactattgctgtcttagccagtaagagcagactgtgcacataggaatc 315

                                                                       
Query: 188 tatgactcttggaactgtgggccagtgactagtaatagatggggagagtcctaatattga 247
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 314 tatgactcttggaactgtgggccagtgactaaaaatagatggggagagtcctaatattga 255

                                                                       
Query: 248 gagagaatggcaactgatgaggtttgttttcttttatataagccaacaataaaaataaat 307
           |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 254 gagagaatggcaactgatgaggtttggtttcatttatataagccaacaataaaaataaat 195

                                                                       
Query: 308 aaaaatttggcaagaacaattgaaaaacagtgaccccttacctaatttctagatctaaga 367
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| 
Sbjct: 194 aaaaatttggcaagaacaattgaaaaacagtgaccccttacccaatttctagatctaagc 135

                                                                       
Query: 368 tggctcataattgaggaacttcttctctttctcactctttctgtttttttgccccatttc 427
           ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 134 tggttcataattgaggaacttcttctctttctcactctttctgtttttctgccccatttc 75

                                                                       
Query: 428 cttgtcttctgtgtctccattctcctcaatgccaacatgtcaccacaagtaaatataacc 487
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 74  cttgtcttctgtgtctccattctcctcaatgccaatatgtcaccacaagtaaatataacc 15

                         
Query: 488 aatattattttaat 501
           ||||||||||||||
Sbjct: 14  aatattattttaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)