BAC Information

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BAC

Clone NameMSMg01-398E05
Chromosome15 (Build37)
Map Location 96,044,880 - 96,045,106
singlet/doubletsinglet
Overlap genenone
Upstream geneNell2, Dbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329, D030018L15Rik, LOC100043335, EG667869, LOC667874
Downstream geneLOC667894, Arid2, Sfrs2ip, Slc38a1, Slc38a2, LOC667941, LOC546651, Slc38a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398E05.T7 (MSMg01no398_e05.b1)MSMg01-398E05.TJ (MSMg01no398_e05.g1)
ACCAG498406AG498407
length798766
length of high quality
(start - end)
228 (69 - 296)248 (328 - 575)
definitionCHROMAT_FILE: MSMg01no398_e05.b1 PHD_FILE: MSMg01no398_e05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:57 2005CHROMAT_FILE: MSMg01no398_e05.g1 PHD_FILE: MSMg01no398_e05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCATCTTCTCACGAAGGATGAGAGTGCTTATAGACAATTGAAAGATAATA
GTCACTGTGGGAAAATCTAATTGAAGCGTGATCCTAAGGAAAAGAACTTA
CGTCAGTGCTTCTCAACCTGGGGGTCAGGTGACCCTCTCACAGGCTCGCC
TAAGACCAGGCGAAATACCGGACATATTACGGTTCTAACCAGGAGTAAAA
TCACAGTCATAAAGTAGCAACAAAACCCGTTTTATGGTGGTGGTGNNNNN
NTNTTTTTTTNTTTTTTTTTTTTTTTNNCNCNNNNNCTCCCTCCCNTCCC
TCTCTTTTTTTTTTTTTTTCTTCTTTCCCTCTACCCCCTCCTTTTTCCTT
TTTCTTACCTTTCCCCTCTCTCCCATCTCTTTCCTCTTCTTTTTTTTCTT
TTTTTTTCTATATTTTTCTTCCCCCTTTATTTTTCTACCCACTTTTTCTT
CCTCCCCTTTCCTTTTTATTTTTCTCCCCCCTTTCCTCCTCTCTTTCCTA
TCACTTTTTTACTATTTTTTCCCCCTTTTCTTCTCCATTTTGTATTCCCA
CCTCTCTTATTCTATTTTATCTCCCTCCTATTTTTCTCTTATTTTTTTTT
CTACCCTTTACAACATATAGACCTTATCCCTTTATTCTTTTCTAATTACC
CTCCCTATTAACTATCCATCTATTTTTATTTATTTATTTTCTTTTAATGT
CCACATTTCCTCTCTTTACTTTATTTTTACCCTAATTCTTCTCTTTTT
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATAAAGAGATAGAAATACTGAAGAAG
GTTCAGACTGAAATGCTGGAAATGAAATCCTCAATAGGTCAAGTAGGAAT
CTCCTCGGAAAGCCTTTACCAGCAGACTAGATAGAGGTGAATATAGAATG
TCAGGGCTTGCAGAAGAGTTACAATGTTCAGACCATGACAGATTCATTAA
TAAACTAGCAGCACAATCAGAAACGCTTTAAAATGCCAACTCTACAAATC
GTGAAGATTAGGAAAAGATAGTGGGTAAATGCTCATGCTTAAAAGCATAG
AAAACATTTTCAATAAACTCACAGCAGAAAGCTTGCCAAATCTGGAGAAA
GAGATGCCTATCCAGGTACAAGAGATATTTAGAACACAAAACAGCCAAGA
CCAGAGAAGAGCCTACCCATACGGTTGTCTTTTAAACGCTACATAAGAAC
AAAGACAGTATATTGAGACCTGTAATAGAGGAACACCAAGGTCATAAAGG
CAGGCCCATCAGAATGATAGCAGACTTCTCAGCAGAAACTTTAGTAGACA
GGATGGATTGGTATACATCAAGCTTCTAAAGGCAGTAATTATAAACCCAG
GTTGCTGTTGTCTCGAAAAACATTTGTCATTGTCCAAGGAGAATGATAAA
TGATAAATCTGACTGAAGGGTCTCCTGAGGACTAAGTCAGTTCTACTAGA
GATTAAGGTGGAAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_e05.b1 MSMg01no398_e05.b1 CHROMAT_FILE:
MSMg01no398_e05.b1 PHD_FILE: MSMg01no398_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:57 2005
         (228 letters)



>mm_chr15_96044806_96045433
          Length = 628

 Score =  387 bits (200), Expect = e-112
 Identities = 221/228 (96%), Gaps = 2/228 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagagtgcttatagacaattgaaagataatagtcactgtgggaaaatctaattgaagcg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgagagtgcttgtagacaattgaaagataatagtcactgtgggaaaatctaattgaagcg 242

                                                                       
Query: 61  tgatcctaaggaaaagaacttacgtcagtgcttctcaacctgggggtcaggtgaccctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgatcctaaggaaaagaacttacgtcagtgcttctcaacctgggggtcaggtgaccctct 182

                                                                       
Query: 121 cacaggctcgcctaagaccaggcgaaataccggacatattacggttc-taaccaggagta 179
           ||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 181 cacaggctcgcctaagaccaggcgaaataccggacatattacggttcat-atcaggagta 123

                                                           
Query: 180 aaatcacagtcataaagtagcaacaaaacccgttttatggtggtggtg 227
           |||||||||| ||| ||||||||||||||| |||||||||||||||||
Sbjct: 122 aaatcacagttatatagtagcaacaaaaccagttttatggtggtggtg 75


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)