BAC Information

Click to search

BAC

Clone NameMSMg01-399C22
Chromosome11 (Build37)15 (Build37)
Map Location 83,314,615 - 83,314,73295,734,395 - 95,734,541
singlet/doubletsingletsinglet
Overlap geneTaf15
Upstream geneCct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28
Downstream geneOTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671, Aatf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399C22.T7 (MSMg01no399_c22.b1)MSMg01-399C22.TJ (MSMg01no399_c22.g1)
ACCAG499106AG499107
length704742
length of high quality
(start - end)
244 (74 - 317)149 (76 - 224)
definitionCHROMAT_FILE: MSMg01no399_c22.b1 PHD_FILE: MSMg01no399_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:08 2005CHROMAT_FILE: MSMg01no399_c22.g1 PHD_FILE: MSMg01no399_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:08 2005
singlet/doubletsingletsinglet
BLAST hitpluralunique
Map location.(83,314,615 - 83,314,732)(95,734,395 - 95,734,541)
sequence
CCCTCAXXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCCGAGCTCCGCGG
AATTCTTTTCCATCACACAATCAATGGCTGCCTTAGCTGATGGAGGGTCA
TCAAATGACATTGTTGCTTCCCCTTTTGGCTTTCCTGTGTCTTTGTCTGT
GTAAAGATTTATCATTGGTTTTCCAGTCTTTTTGTTAGTCTTGATAATTC
CTATTTGCTTAAAGAACTCTCCCACTTGATCTGTAGACACACCCTCCCCA
AGTTCCTTGCACAAAGATTGTGTTGTTATCTGAATTATCAGACTCTGAAT
CAGCATCTGGTCTGGGTCCTTATTTCCTGTGACCACCAAAATTTTTGAAG
CCACCGCGGTCACCACCACTTGATCCTGTCATAGGACCTCTTCCATCCTT
GTCATATCCCCCACGCCCTCCACCTCCTCCCTGTGACCCGCCATATCCTC
TATTATCTTCTCCATACCTACTCACATCACGACGGTCATCTTGTGTGTGG
TGGCTGTAGTTTTCCCTTTGTGAATGGTAAGACTGTTGGTTCTGATTATA
GGAATCATGCTGCTGATAATTGGACTGCTCATCATATGAGCCTTGACGCT
GATCATAACCTGACTGCTGCTCATAAGATTCTTGCTGACCATATTCTGAC
TGGTCATATGAAGGTGTTCTTCCACCTTGACCTCCTGATGACTCCGTGTT
TTGT
TCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTACATCTCTATGGAAGCTAAATCC
ATCAGCAAGGCAACGAGATCCACCTTCCTTACATACGGAATTCCAATAAA
GACAAAGTGGCTACTCATTGTCACGATGCGTCCCTCTTGATAACAAGCAC
ACACTCGTCTCTCACCATCCGGTAGAGTATCCTCACAGCAAAAAGTGAAC
GGAGAGGGCAGCTTCCACCCACCCTCCAGAAACGCAACTTATTTATACCA
CCTTCGTGAGACTAATGAAGCTGTCTGGTAAATAAAGAATTCTCATATTA
TAGCCGCAAAGGACAGACTGACATAATTAAAGATGCCTTCTATCCCTCAT
CTCCTTGCATTACTGACTTTCATCCCTCACTGGCTTCGTGAATTGACTGC
TCTACAGTACGTACCTGTGACACATTCTGTACAAATCCTGACTGTAAACT
GGATACTTAATCCGCCTTGTCTTTGCAACAACCTTCTTATGAGCGATACC
ACCCAGTTAGATAGCGAAGGACACTGTTCAATAGACTCTTATGACATCCT
TGTATCATTAACTTTTTAATACCCTTTGTAACTTCCTTTAAGCCCAGTCA
CTTTAGGCCTCCGTTTATTCTATTTTTCCTAACTCCATTTTTCTTCCTGC
CTTAACCTTCTGCTCAAGCCTTATTATTTATTCCCCCATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_c22.b1 MSMg01no399_c22.b1 CHROMAT_FILE:
MSMg01no399_c22.b1 PHD_FILE: MSMg01no399_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:08 2005
         (244 letters)



>mm_chr11_83314415_83315058
          Length = 644

 Score =  221 bits (114), Expect = 4e-62
 Identities = 117/118 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggctgccttagctgatggagggtcatcaaatgacattgttgcttccccttttggcttt 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 318 atggctgccttagctgatggagggtcatcaaatgacactgttgcttccccttttggcttt 259

                                                                     
Query: 61  cctgtgtctttgtctgtgtaaagatttatcattggttttccagtctttttgttagtct 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cctgtgtctttgtctgtgtaaagatttatcattggttttccagtctttttgttagtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no399_c22.g1 MSMg01no399_c22.g1 CHROMAT_FILE:
MSMg01no399_c22.g1 PHD_FILE: MSMg01no399_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:08 2005
         (149 letters)



>mm_chr15_95734195_95734743
          Length = 549

 Score =  230 bits (119), Expect = 3e-65
 Identities = 140/147 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctacatctctatggaagctaaatccatcagcaaggcaacgagatccaccttccttacata 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ctacatctctatggaagccaaatccatcagcaaggcaacgagatccaccttccttacata 288

                                                                       
Query: 61  cggaattccaataaagacaaagtggctactcattgtcacgatgcgtccctcttgataaca 120
           | |||||||| |||||||||||||||||||||||||||||||| ||||||| ||| ||||
Sbjct: 287 cagaattccagtaaagacaaagtggctactcattgtcacgatgtgtccctcgtgagaaca 228

                                      
Query: 121 agcacacactcgtctctcaccatccgg 147
           ||||||||| |||||||||||||||||
Sbjct: 227 agcacacacgcgtctctcaccatccgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 549
Length adjustment: 8
Effective length of query: 141
Effective length of database: 541
Effective search space:    76281
Effective search space used:    76281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)