BAC Information

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BAC

Clone NameMSMg01-400M09
Chromosome15 (Build37)
Map Location 90,034,595 - 90,034,853
singlet/doubletsinglet
Overlap genenone
Upstream geneSaps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10
Downstream geneAlg10b, Cpne8, EG627342, LOC100042462, LOC100042471, EG667682, Tcea1-ps1, Spn-ps, Kif21a, EG635871, Abcd2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400M09.T7 (MSMg01no400_m09.b1)MSMg01-400M09.TJ (MSMg01no400_m09.g1)
ACCAG500315AG500316
length788780
length of high quality
(start - end)
249 (73 - 321)260 (332 - 591)
definitionCHROMAT_FILE: MSMg01no400_m09.b1 PHD_FILE: MSMg01no400_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:11 2005CHROMAT_FILE: MSMg01no400_m09.g1 PHD_FILE: MSMg01no400_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGA
ATTCTATATCTGGTTTCTCAGGCAGCTAGGAGAAACAGTGAGCCACTAGG
CCTGGCTTCAGCTCCTGAAACCTCAATTCCTACCCCCTAGTGACACACTT
CCTCCCACAAGGACACATCTACTCCAACAAGGACACGCCTCCGATAATGC
CATTCTTTATGAGTCTATGAGGGGCCAATTTTACTCAAATCAACACACAC
AGAGTATATGTCTCTGGTGGAAATGTCTTAGTGTTCATAACAGACACAAG
AGGGTTAACTCCTGGCTAACTGTATTTTAGGAGTCTTACTCCTAGGTATT
CCAGGTCGAGCAGACACCTTTGGACGTTGGTGGAGGATGAGTGGCTGTCA
TGGAAAGACTGAGGGATTCTGAATAAGCTGTTTGAGAAGACTTGATTAAA
CTGAGCAGTCCAAATAAAAGCAAGTTCCAGTTAAAAGAGGAGCTCACAAG
AGCCTGGTCCAACATTGGCCAAGAAAAGGGTGTATCAGAAGGCAGGAAGA
CAGGCTAGTACAGCTTCTAACACACATGTGGAGAGTTAGCTGAGTATGTG
ACTAGACAGCGTCTGCTATGCTATGTATGTTCATAACACAACTTGTACGA
TGCGTTCCTCTGAAGTGTGTTCTTCCTTTAAATAACGGATACTCATATTT
TGGCCTCATCTTTTCCTGTTTCTCTCCCTATCTCCCCCGGTTTCTACTTC
GTTTTTTCCCCCACACCCTATATACCCTCTTTCTCCCT
AATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCCGAAATATCTCTCAGTGCCCCATCTCAGAGATGACAC
AGTTGCCAGGGTTGGACGGACACCGGCTGTTCTAGCTGCTTTAAGCTGAG
AGTGCTTAGGAGCTGTTGAGCCAAGACAGGCTCCTGGGATTGGCCCACAG
TGCTGCCATAGGACCTCCAGCAAACAAGGACATCTGGGGTTCCATTTGTA
AGACTCATCTGTAGTTTAAAAGCTTTGATACAATGAGCGTCGAACCTAGC
GATGCAATTACTACAAAACCCACCAATANTAATGACAGGATGGTGACAAA
GAAGGGCCCAAAGATTACATGATCCAAGTCCGACAGGGGATGTAGACTTT
GATCTGTCCCCTAGCTTTGATCTAATAGCCGGTAGGGAATGTATTCAGGT
GGCCTTTGTGTGGAACCCTGAGCATCAGTCTCCACCTGGGATGAGATGCT
TATGTAAGTGTAGTAAGGTAAATTTACGACTGCACATAGTCCTCATTGGN
CATACTCCTCACTGGCCAGGCAAGCAGGAGGTCTAAAGCCTAGCAATTAT
GAATTAAATTATCTACCGATGTCTCTGTGAGAGAGAAAGTACGTGTGGCA
CTTTTTAAACCATGGTGTTTTGTCTTCCCTACCTCCCTCACATCCCGTCT
ATATTACTGTTTGACCCCTGAAGGTATCCCCTCCCCCTCTTTTTTTAGGA
ATCCTGGCCCTCCATTTTTTGATTCCAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_m09.g1 MSMg01no400_m09.g1 CHROMAT_FILE:
MSMg01no400_m09.g1 PHD_FILE: MSMg01no400_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:11 2005
         (260 letters)



>mm_chr15_90034395_90035054
          Length = 660

 Score =  487 bits (252), Expect = e-142
 Identities = 257/259 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgacaggatggtgacaaagaagggcccaaagattacatgatccaagtccgacaggggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgacaggatggtgacaaagaagggcccaaagattacatgatccaagtccgacaggggat 260

                                                                       
Query: 61  gtagactttgatctgtcccctagctttgatctaatagccggtagggaatgtattcaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagactttgatctgtcccctagctttgatctaatagccggtagggaatgtattcaggtg 320

                                                                       
Query: 121 gcctttgtgtggaaccctgagcatcagtctccacctgggatgagatgcttatgtaagtgt 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctttgtgtggaatcctgagcatcagtctccacctgggatgagatgcttatgtaagtgt 380

                                                                       
Query: 181 agtaaggtaaatttacgactgcacatagtcctcattggncatactcctcactggccaggc 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 agtaaggtaaatttacgactgcacatagtcctcattggtcatactcctcactggccaggc 440

                              
Query: 241 aagcaggaggtctaaagcc 259
           |||||||||||||||||||
Sbjct: 441 aagcaggaggtctaaagcc 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)