Query= MSMg01no401_a11.b1 MSMg01no401_a11.b1 CHROMAT_FILE:
MSMg01no401_a11.b1 PHD_FILE: MSMg01no401_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:33 2005
(572 letters)
>mm_chr15_28954045_28955017
Length = 973
Score = 1040 bits (538), Expect = 0.0
Identities = 564/580 (97%), Gaps = 14/580 (2%)
Strand = Plus / Plus
Query: 1 catgctcattttcctgatgtggctttcttgcattcatggggaaatgaaaaatggatagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 catgctcattttcctgatgtggctttcttgcattcatggggaaatgaaaaatggatagtg 259
Query: 61 catagtcattagttgttctgtgtgtttctattctgttaatgaagttcagcttcttcactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 catagtcattagttgttctgtgtgtttctattctgttaatgaagttcagcttcttcactc 319
Query: 121 aactccagaagaagcactaggaaaggttatttaccctaatgcacagagaagccagtgctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 320 aactccagaagaagcactaggaaaggttatttaccctaatgcacagagaagccagcgctt 379
Query: 181 ctttccactctgttttgtgtgcatctgtccctggcaaatgcagccagagcctgagatatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctttccactctgttttgtgtgcatctgtccctggcaaatgcagccagagcctgagatatc 439
Query: 241 ctatttttt-------gttcactggagcctcccacccttcctcatttccaaaagctgatc 293
||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cta------aaccaaggttcactggagcctcccacccttcctcatttccaaaagctgatc 493
Query: 294 ctacttttgaagtcttattttcaactgtgtagagaatatttgtccattagtacaagatga 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctacttttgaagtcttattttcaactgtgtagagaatatttgtccattagtacaagatga 553
Query: 354 acagaaaaaaagttgaactactgtgtttacaatcaagtttatggtttgatgagtttaggg 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 acagaaaaaaagttgaactactgtgtttacaatcaagtttatggtttgatgagtttaggg 613
Query: 414 atatattgggcttgagttaatgaatgccaatactttatttttgtaaagaagtcatttttt 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 atatattgggcttgagttaatgaatgccaatactttatttttgtaaagaagtcatttttt 673
Query: 474 t-aataatcctggtaaatttcatagttcttagcttatatgtggaaagtactaaagcaaaa 532
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 674 ttaataatcctggtaaatttcatagttcttagcttatatgtggaatgtactaaagcaaaa 733
Query: 533 gagaaagcatgttatactggtgtcttgggtgtctttagaa 572
||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gagaaagcatgttatactggtgtcttgggtgtctttagaa 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 973
Length adjustment: 10
Effective length of query: 562
Effective length of database: 963
Effective search space: 541206
Effective search space used: 541206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_a11.g1 MSMg01no401_a11.g1 CHROMAT_FILE:
MSMg01no401_a11.g1 PHD_FILE: MSMg01no401_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:33 2005
(488 letters)
>mm_chr15_29168527_29169413
Length = 887
Score = 770 bits (398), Expect = 0.0
Identities = 437/450 (97%), Gaps = 3/450 (0%)
Strand = Plus / Minus
Query: 1 acatattttctgtacaaaatgatgtgtaaagttcagtggaaaacaagacaaacaaacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 acatattttctgtacaaaatgatgtgtaaagttcagtggaaaacaagacaaacaaacaga 589
Query: 61 attaggtgcgtatgtagcctcaagctacctagcactgatttaaaaatgagttcataaaaa 120
||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 588 attagatgagtatgtagcct-aagctacctagcactgatttaaaaatgagttcataaaaa 530
Query: 121 tgtactataagaagaaattagatcaacatcaccgtaggtctggtaagtaagaacaaattc 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tgtactataagaagaaatgagatcaacatcaccgtaggtctggtaagtaagaacaaattc 470
Query: 181 tactcatacagctaagaggagagatcaaagacaagacacttgggtaatatgagacagtca 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 469 tactcatacagctaagaggagagatcaaagacaaggcacttgggtaatatgagacagtca 410
Query: 241 ggtagtttgttttaattctaggccaagcagtgatataatatgagtctcat-ttgtctaca 299
||||| | | |||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 409 ggtaggtaggtttaattctaggccaagcagtgatataatatgagtctc-tgttgtctaca 351
Query: 300 gatggtaaccagagtgtgatatagcatggagaatgttctgtacacacctcaatcacagag 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 350 aatggtaaccagagtgtgatatagcatggagaatgttctgtacacacctcaatcatagag 291
Query: 360 cagttaatactgtttactttataaattacttaccataaaagaaatacttttctgatttac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 cagttaatactgtttactttataaattacttaccataaaagaaatacttttctgatttac 231
Query: 420 aaacacattccatggagcatcatgattttc 449
||| ||||||||||||||||||||||||||
Sbjct: 230 aaatacattccatggagcatcatgattttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 887
Length adjustment: 10
Effective length of query: 478
Effective length of database: 877
Effective search space: 419206
Effective search space used: 419206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
