BAC Information

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BAC

Clone NameMSMg01-402H19
Chromosome15 (Build37)
Map Location 73,256,145 - 73,256,257
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13, LOC100041120, Chrac1, Eif2c2, Ptk2, LOC666053
Downstream geneLOC100040929, Dennd3, Slc45a4, Gpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966, EG666113, LOC100041307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402H19.T7 (MSMg01no402_h19.b1)MSMg01-402H19.TJ (MSMg01no402_h19.g1)
ACCAG501622AG501623
length759754
length of high quality
(start - end)
113 (231 - 343)188 (79 - 266)
definitionCHROMAT_FILE: MSMg01no402_h19.b1 PHD_FILE: MSMg01no402_h19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:23 2005CHROMAT_FILE: MSMg01no402_h19.g1 PHD_FILE: MSMg01no402_h19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTCTATAATTTGTGGTCGCTAATACAACTCACTATATCCCAGAGGAT
CCGCNGGAATTCCAGGACTTTCCCAGGCTATACAGAAGAATCCCTGGTCT
CAAAAAAAAAAAAAAAAAAAACCATTCAAAAAAAAAAAAGAAATAATATT
GGCCATGGGAAAGCAAAGAGCTATTACAAAACAGCAGAGTGTCTGCTGTG
TCAGTGTGGCTGACAGATGGGAGAGTAGTATCCAGAAGGCTGTCCTCATA
CATCCTATAATAGCCTCATAACCCTGCGGGTGACCACCTGTTATCGATAC
CCCCACTTCATGGATGTGAAAGCTGTGTCTCTGGATAAAAAGAATGAGTC
AGGTAACAAGGTAAAAATTCAAGGCTGCTTCCTTCCAACCATATAGTCTC
TGCGCCTGCTTTTCTCTCTCTGGGTAATCAGCCACACTCCAGCCACCCGC
ACTCTCACTCCTATAGCATTCTACTGCACTCAAACCCCTTGCAAGAAAAC
AAAACAGCCCGCCTAACTTGGCTTCTCTCTTCCCGCACTACATCAGATGG
GCCAGTACTTTCCTGGCGTGTAAAGTCTCCCTGAAAAGCCTTCCTGCATT
CTATATTGCTGCTGCCCAATCCCCCATCATAATCCCCCTCGAAATCGCCT
TTTCTTCCCCACACGCCTTTTACTTCCCCCCCAAAAAAATCCCCCCTTAC
TTCGTGCCAAACCTATAACGTTTAATTTTTATCAGCCTCGCCCCTTTTCT
ATTTAATTC
GATGCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTGCAAAGTTAAAAGAAAA
CGTGTGCTTGCTGTCTCTAAAGAATTAAGGGGCTGGGGTCTTGGGACGCT
GATTTGTGGGATAATTAAAGGGGAACCTGGAGTAAATGACTGGGCTAATA
TGTAAATAAGAGACCAGGCTTATGATCTAGAGGACTTTAGGGGAGCAGAA
GAGAACTTCTTGTAGAGCCGTCTCTTATAGAGCAGAGCAGAGAGAGCTAC
CTGGGGATCTCCAGAGAACGCATGACAAAGCCGACTGGGAAGCTGCTGTC
CGGAGCAGACTGAAGTTATCATCTTGGTCCCAGGATTTGCCTTTGAGTCC
TTTGTCTTCGCCACTCCCAGACCTCTTCTCTCAGAATCCCTCTACAAGCT
GAGGCTGGACCTTTGCACTGCGGGCCTGCTGGTCATAATCTAAAGAAACC
TTTCCCCCTCTCAAGCTGCTTGCTGTGCCGATGGAAAGCTGGCTCCCGAA
AATCCCCCCTCCCCTCCGCTAAGGCTTGGGTCCTTCCTAACCAATGATAA
TCCACTTGGGCACCTTTTGTCTTGCAGTATATGGTACGGCTTGTTCCCCT
CTCCAGTATTACACCCCCGGCTATACGGGCCAAAACCACCGCGCTCGTGA
GTTATTGTTTTCTCCTAAAATATCCCCCCCCCTTTCCTTAATTTGCCTAT
CTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_h19.b1 MSMg01no402_h19.b1 CHROMAT_FILE:
MSMg01no402_h19.b1 PHD_FILE: MSMg01no402_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:23 2005
         (113 letters)



>mm_chr15_73255945_73256457
          Length = 513

 Score =  195 bits (101), Expect = 5e-55
 Identities = 110/113 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccagaaggctgtcctcatacatcctataatagcctcataaccctgcgggtgaccacctg 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccagaaggctgtcctcatatatcctataatagcctcataaccctgcgggtgaccacctg 260

                                                                
Query: 61  ttatcgatacccccacttcatggatgtgaaagctgtgtctctggataaaaaga 113
           ||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 ttatcgatatccccacttcatggatgtgaaagctgtgtctcaggataaaaaga 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 113
Length of database: 513
Length adjustment: 8
Effective length of query: 105
Effective length of database: 505
Effective search space:    53025
Effective search space used:    53025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)