BAC Information

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BAC

Clone NameMSMg01-404E08
Chromosome15 (Build37)
Map Location 43,242,881 - 43,243,282
singlet/doubletsinglet
Overlap genenone
Upstream geneAngpt1, Rspo2, LOC675960, Eif3s6
Downstream geneTtc35, LOC100039288, Tmem74, LOC100039309, Trhr, LOC665041, Nudcd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404E08.T7 (MSMg01no404_e08.b1)MSMg01-404E08.TJ (MSMg01no404_e08.g1)
ACCAG502982AG502983
length765759
length of high quality
(start - end)
429 (64 - 492)403 (68 - 470)
definitionCHROMAT_FILE: MSMg01no404_e08.b1 PHD_FILE: MSMg01no404_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:52 2005CHROMAT_FILE: MSMg01no404_e08.g1 PHD_FILE: MSMg01no404_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGAGATAGCTAATCGACTCACTATTTCCAGAGGATCCGCGGAATTCAA
TAACTTTCCTAAAGAAATACAGGAGAACACTGCTAAAGAGTTACAAGTCC
TTAAAGAAAAACTGGAAAACACTGCTAAAGAGTTACAAGTCCTTAAAGAA
AAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAAAACAGGA
AAACACATCCAAACAGGTGATGGAAATGAACAAAGCCATACTAGACCTAA
AAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCGACGCTGGAG
ATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCCAGCATCAGCAA
CAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGACTCCATAG
AGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTA
ACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACG
CATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGAACAGCAA
ACATCTTTCAACAAAATTATTGTAGAAAACTTCCCAAACTTAAGAAAGAG
AAGCCCTTGAACTTATCAGAAGCCTACGAATTTCTTAATATAATGTGCCA
TAAAAAAAAATCTCCCCCACCCCTTTTTAATTCTAAAAAACATAAGGGCC
TCTTTAAAATTGAATCAATCTCATATTCTAAAGGTATAAAAGGTCTAGGA
TCCTAAATCAGGGCC
TGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTCTAAAAAGATTAAGTATTGTTATTTCATTT
ACTTCCAATTTATGAGATTAACTGTGATTGCAATTAGGAAATTTAAAATA
ATTTTTGTGGCATATATACACTGTATTATCAAGGAACATCTGAATTTTAA
AAGTATTTAAAAGATAACATTACTAAATTTAAAATATTATTCAACTCTAT
AGTAGGAAAAGTAGTACAATACAAATACAATTAAAAATTAGTGTCCTTTG
TTAGAAAGTATTAATAATATTTGGGAATTTAGTATAAGCTATTGAGAAAA
CATTTATTACTCAATAAATTGTATTTTGATGACTAGCTAGTCATTTGGAA
ACTAATTAAGCTAGATTCTTACCTAACTCATTATCCTGAAATAGATTCCA
GATGGATAAAATATTAAACTTAAGCCATAAAACTAGTCTTCGATAACTGT
CTTTTATAAACTTACAAAAGCAAAGGTTTTGAAAGGCCATGCATAGTTGG
AAATCCAAGGCTTGTCCTTCTAAGTATGTACAAACAACGCTTATTCTTTA
CTTCCCCTAATTTTATGTTATCCCAAGTGAACTTTTTATTTTTAATTCCC
CGGAAACTCCCTTTTTTACCTCCAAAAAAAACCCCCCTCTACTTTAAACC
CGGTGAATATACCCCCCCTATTCCACTTATTTTTTTACCCGACTAAATTA
AAATATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_e08.g1 MSMg01no404_e08.g1 CHROMAT_FILE:
MSMg01no404_e08.g1 PHD_FILE: MSMg01no404_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:53 2005
         (403 letters)



>mm_chr15_43242618_43243420
          Length = 803

 Score =  756 bits (391), Expect = 0.0
 Identities = 400/403 (99%), Gaps = 1/403 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctaaaaagattaagtattgttatttcatttacttccaatttatgagattaactgtga 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tttctaaaaag-ttaagtattgttatttcatttacttccaatttatgagattaactgtga 607

                                                                       
Query: 61  ttgcaattaggaaatttaaaataatttttgtggcatatatacactgtattatcaaggaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgcaattaggaaatttaaaataatttttgtggcatatatacactgtattatcaaggaac 547

                                                                       
Query: 121 atctgaattttaaaagtatttaaaagataacattactaaatttaaaatattattcaactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 atctgaattttaaaagtatttaaaagataacattactaaatttaaaatattattcaactc 487

                                                                       
Query: 181 tatagtaggaaaagtagtacaatacaaatacaattaaaaattagtgtcctttgttagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tatagtaggaaaagtagtacaatacaaatacaattaaaaattagtgtcctttgttagaaa 427

                                                                       
Query: 241 gtattaataatatttgggaatttagtataagctattgagaaaacatttattactcaataa 300
           ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 426 gtattaagaatatttgggaatttagtataagctattgagaaaacatttattagtcaataa 367

                                                                       
Query: 301 attgtattttgatgactagctagtcatttggaaactaattaagctagattcttacctaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 attgtattttgatgactagctagtcatttggaaactaattaagctagattcttacctaac 307

                                                      
Query: 361 tcattatcctgaaatagattccagatggataaaatattaaact 403
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tcattatcctgaaatagattccagatggataaaatattaaact 264


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)