BAC Information

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BAC

Clone NameMSMg01-406M13
Chromosome15 (Build37)
Map Location 94,135,105 - 94,135,359
singlet/doubletsinglet
Overlap geneAdamts20
Upstream geneYaf2, Zcrb1, Pphln1, LOC627623, Prickle1, Zfp42-ps1, LOC100042627, LOC100042631, D630010B17Rik
Downstream genePus7l, Irak4, Twf1, Tmem117, LOC100043315, Nell2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406M13.T7 (MSMg01no406_m13.b1)MSMg01-406M13.TJ (MSMg01no406_m13.g1)
ACCAG504897AG504898
length760780
length of high quality
(start - end)
194 (120 - 313)263 (124 - 386)
definitionCHROMAT_FILE: MSMg01no406_m13.b1 PHD_FILE: MSMg01no406_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:13 2005CHROMAT_FILE: MSMg01no406_m13.g1 PHD_FILE: MSMg01no406_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTCATAATTGCGGCGCTAAACGACTCACTATTGCTGCAGCTGCGCGGAA
NNCNNNNGTTGACAAGAGCCCCACTTTTNAAGGGGGTTATTTGATTTTCT
GAAGTCCACCTTCTTGAGCTCTTTATATATGTTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTT
GTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGATTTATTAG
GTCCCATTTGTCAATTCTCAATCTTACAGCACAAGCCATTGCTGTTCTGT
TCAGGAATTTTTCTCNGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGCGCTTCTGGTTTTATGTGAAGTTTCTTGATCCAC
TTAGATTTGACCTTAGTACAAGGAGATAACTATGGATCGATTTTCATTCT
TCTACATGAAAACGATCAGTTGTGCTAGTACCTATTGTTGAAAATGCTGT
CTTTCTTCCACTGGATGGTTTTAGCTCCCTTGCCAAAGATCTAGTGAACT
TATGTGTTCGGGTTTCATTTTCTGGATCCTCTATTCTTATTCCTTAGGTC
TACTTGGTCTGTCTCTATTCCTTTTACATGTCCGTCTGTTATTTTTTTTT
TTTTTATTATATAATCCTTTAGTCTTTGTCTATGTTCTGATTCCTTACCC
TGCTCTCCTCTCATTTCTTACAATAATAAGCTTTTTTGCTAACTCTATTT
GTCTTCTCCG
CCATTATATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGTGTGTATGCATGTATATGTGCGTA
TGTGTATGTATATGTGTGTGTGCATATATATATGCATATACATATGCATA
TATATACATATATATGCATGCATACACAAATACATGTACACACACACAGA
GAATTCATCCAGGAAGTTTTTAATTAAGAAAAAGAATTTACACAATGAAA
AAAAATGTTTTAAATTTAAAATCCTCAAAAGTTTTAATGTCAATGCCAGA
GTCTGTCTCCCATCTGTTTTCCAATACCTCTTGTTTAATATCATGTGTTG
AATATTTGTTTTCTTTTCCATATACTTTTTACGTTTAGTAATAAATATTT
AATCATTCCAGGTTTTGTACCAATGAACAGGTGTTTCATTGTGATGTCTT
CTTAATGCCAAAACCTGCTCTGACCACTCCCCCGCCCCATCCATCTCCCA
GAGTTCCTTCAATTCCCAACCCTTTCTCTCCATCTGGTCCTTTCCTGCTT
TCACTTTCTATGCAATCATGTCATGGCTCCTGTGCTCTGTTTTACCGTGC
CTTTCATCTATGCTATTTATTGACCTTTTCACCCCACGCTTTATTTCCTC
CTCTCATTTTCTCCCTTCTTTTTTCCCCTCCCATTTACTCTCTAAACTCT
CCCAATATTATCCACCCATATACATACTATTTGATTCATTTTTTTTAATT
ATTATTAATACATTGTCACCTTGTTTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_m13.g1 MSMg01no406_m13.g1 CHROMAT_FILE:
MSMg01no406_m13.g1 PHD_FILE: MSMg01no406_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:13 2005
         (263 letters)



>mm_chr15_94134824_94135487
          Length = 664

 Score =  393 bits (203), Expect = e-114
 Identities = 244/259 (94%), Gaps = 5/259 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   tatatatatgcatatacatatgcatatatatacatatatatgcatgcatacacaaataca 61
           |||||| ||  ||||||| || || | ||||||||||||||||||||||||||| |||||
Sbjct: 536 tatatacat--atatacaaatacacacatatacatatatatgcatgcatacacatataca 479

                                                                       
Query: 62  tgtacacacacacagagaattcatccaggaagtttttaattaagaaaaagaatttacaca 121
           |||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 478 tgt--acacacacagagaattcatccaggaagtttttaattaagaaaaaaaatttacaca 421

                                                                       
Query: 122 atg-aaaaaaaatgttttaaatttaaaatcctcaaaagttttaatgtcaatgccagagtc 180
           ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 atgaaaaaaaaatgtttttaatttaaaatcctcaaaagttttaatgtcaatgccagagtc 361

                                                                       
Query: 181 tgtctcccatctgttttccaatacctcttgtttaatatcatgtgttgaatatttgttttc 240
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgtctcccatctggtgtccaatacctcttgtttaatatcatgtgttgaatatttgttttc 301

                              
Query: 241 ttttccatatactttttac 259
           |||||||||||||||||||
Sbjct: 300 ttttccatatactttttac 282


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 664
Length adjustment: 9
Effective length of query: 254
Effective length of database: 655
Effective search space:   166370
Effective search space used:   166370
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)