BAC Information

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BAC

Clone NameMSMg01-407G23
Chromosome15 (Build37)
Map Location 100,815,237 - 100,815,680
singlet/doubletsinglet
Overlap geneScn8a
Upstream geneD330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8
Downstream geneEG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407G23.T7 (MSMg01no407_g23.b1)MSMg01-407G23.TJ (MSMg01no407_g23.g1)
ACCAG505394AG505395
length751773
length of high quality
(start - end)		633 (30 - 662)447 (72 - 518)
definitionCHROMAT_FILE: MSMg01no407_g23.b1 PHD_FILE: MSMg01no407_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:05 2005CHROMAT_FILE: MSMg01no407_g23.g1 PHD_FILE: MSMg01no407_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATT
CCAAGATTTTTCTGTGAACTGATAGTTACATCAGCGCCTGTATCCACAAA
TTTGTCTACTTCAGTACCTTTTATGTGAAATTTTAATATTTGCCTCTGAT
CATTAACAACTGTTTGCCGGAACACATGCTTTTCAGTCCTTTCAGACCCT
CCTGTTCTCTCTACTAGAGCGGCTTTGTCTCTGGGACAGGGAAACAGTAG
CAGCCGAACAAGCCTCTATCACCTGCATTAATTTGCATCTCTCTCCCTCT
CCCTCTCCCTCTCCCTCACACACACACATGCCATAACTTTAATTTCTCCT
TTGAAATCTTCATGTATGATTCCTGGGTGCACAGTGAATCCTTGGGGAAT
CAATCCATCTATTCTCAAGATCATCCCACTGTCTCTGCAGGCAAAGGAGC
ACGAACTCTCTCGAAGTTTTGGATATAGAGTAATGCTTTTCTGTGGCCGA
GTCTAGAGCAGCACTGCCTGCAGAGGTGTTAGATCTCCAGTGCTGAGTGC
AGGCTTTTTAGTCTGCGTGTTATGGCTTGACTGGAACAGCTCACAGTCTT
TGCTTGGTGGGGAGCTAAGCTAGGCCCCCAAGGCTGTTTCCTTGAATATC
TCTTTTGGATCTGCATTCCGGAATCCAGTGTCCGCCTTTGCCAAAGTGGA
TACACATTGCAAGAAGCCTACGAGTCCTGTTTCAGATTCAGAAAAACATT
G

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTTTTTCCATTTCCTTCCACCCAGCATG
TGCTGCTAGAGGGAACGGAGAGCCATGGGCATGCCAGATATACCTCTGCT
TCCATTAAGTTCCATATACCAGCCCTGTCCTTTCGGATCTTTATCTGTAC
AGTCAACAGCTTCCTAGAGTCCTAACACAGATCACCCAGAGACATTTTGC
CCACGATCTGCTTCCTTTCCCACATGCACCATGCTAATTAAGGGGCTAAT
GGTCTTCATGCTGTGTTAGAGGCACAGAGGAGTTAGACCGTTAGAAGAAC
ATGCTGCCTCAAGAGGCCCACACCAGTTGCAGACGTTAAAAAGCCGGAAG
TAGGCAGGGTTAGGACTACCGAGGTCTAGTAATTTAAAACTTTTAAAAAA
GAGCTTAGAATTTAAAGAAATGTGGAGATGGCTTTTCCCAAAGAGGGAAC
CGTTACTGAGCCCTGAGAGATCCCCTCATAAGTTCCCAAAGCGGATCCAT
GTGCGAATAAATTTTGAGCTATCACGGTTTGATCCCACCACTAAGTCTTC
CCTTGTTATTGTCGACCCCGAAGGCGTGAAACTTCCCTGCCTAAACCCAC
TGTTGAGAAGACGTTTCCATTCCTGACTGGGTATCCCGAGAAAGGTGCCC
CAAACTTGTCTTGGATGTGGTACGCCGGATCCCCCCTGTTAATTTAAGAA
TTATCGATTTTTTTCGGGATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_g23.g1 MSMg01no407_g23.g1 CHROMAT_FILE:
MSMg01no407_g23.g1 PHD_FILE: MSMg01no407_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:05 2005
         (447 letters)



>mm_chr15_100815037_100815884
          Length = 848

 Score =  820 bits (424), Expect = 0.0
 Identities = 439/444 (98%), Gaps = 1/444 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttttccatttccttcca-cccagcatgtgctgctagagggaacggagagccatgggc 59
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tttttttccatttccttccaccccagcatgtgctgctagagggaacggagagccatgggc 585

                                                                       
Query: 60  atgccagatatacctctgcttccattaagttccatataccagccctgtcctttcggatct 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 atgccagatatacctctgcttccattaagttccatataccagccctgtcctttcggatct 525

                                                                       
Query: 120 ttatctgtacagtcaacagcttcctagagtcctaacacagatcacccagagacattttgc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ttatctgtacagtcaacagcttcctagagtcctaacacagatcacccagagacattttgc 465

                                                                       
Query: 180 ccacgatctgcttcctttcccacatgcaccatgctaattaaggggctaatggtcttcatg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ccacgatctgcttcctttcccacatgcaccatgctaattaaggggctaatggtcttcatg 405

                                                                       
Query: 240 ctgtgttagaggcacagaggagttagaccgttagaagaacatgctgcctcaagaggccca 299
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ctgtgttagaggcacagaggggttagaccgttagaagaacatgctgcctcaagaggccca 345

                                                                       
Query: 300 caccagttgcagacgttaaaaagccggaagtaggcagggttaggactaccgaggtctagt 359
           |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 344 caccagttgcagacgttaaaaagctggaagtaggcagggttaggactactgaggtctagt 285

                                                                       
Query: 360 aatttaaaacttttaaaaaagagcttagaatttaaagaaatgtggagatggcttttccca 419
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aatttaaaactttttaaaaagagcttagaatttaaagaaatgtggagatggcttttccca 225

                                   
Query: 420 aagagggaaccgttactgagccct 443
           ||||||||||||||||||||||||
Sbjct: 224 aagagggaaccgttactgagccct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 848
Length adjustment: 10
Effective length of query: 437
Effective length of database: 838
Effective search space:   366206
Effective search space used:   366206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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