BAC Information

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BAC

Clone NameMSMg01-407H02
Chromosome15 (Build37)
Map Location 97,833,364 - 97,999,506
singlet/doubletdoublet
Overlap geneCol2a1, Senp1, Pfkm, Asb8, AI836003
Upstream geneSlc38a4, Amigo2, BC038822, LOC100043354, LOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c
Downstream geneOlfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407H02.T7 (MSMg01no407_h02.b1)MSMg01-407H02.TJ (MSMg01no407_h02.g1)
ACCAG505400AG505401
length745757
length of high quality
(start - end)
479 (44 - 522)543 (74 - 616)
definitionCHROMAT_FILE: MSMg01no407_h02.b1 PHD_FILE: MSMg01no407_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:05 2005CHROMAT_FILE: MSMg01no407_h02.g1 PHD_FILE: MSMg01no407_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,999,031 - 97,999,506)(97,833,364 - 97,833,906)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCGCGATGCTTCCAAAGTCCTTGACTCTACAAATCCTTCTGTGAGGGAG
TCTCTCTCCCTGACCTATAAGGACCACGTTTGAAGTGAAGAACACTGCAC
CGCACTGTTCAGTCCCCTCGGGTTAAGCACTTGGAAACCCAAAGCCAGCG
CGGGTAGTTGGTTCCCTGGTGGGGTCTCCCTCACAGAGAGGCCTCGCCCT
CCAGCTGCAGCAGGGTAATGTCAGGAAGGTCGGGGGGCTCCACAAGTGGC
CCATCCTCCCCAAGGAGACCGGGGCTCTCAGAGAGCTCGCAGTGACTGGT
GGGTGTGGCGGGGTTAGGTGTCTCTTTCTCCTCTTCGTCCTCGTCTTCAT
CAGGATCACGACCCAGCAAGCCGCTGTCCTCGATCCCAGGCGAAGGTGTC
TCTGGTTCATGGGGAACACTTGGGAAGCTCCCCTTGCCGCCGGCCACGCC
CAAGCCTCCCTGGCGGGGCGCAGTGGTCATAATCTGGCACATGGAGACTA
TAGCCCGCTGGTTGGCGCACACGTCGTCCGACAGAACCTGGATGGGCGAG
GCCTGCTCGGCCAGTGTCCCTCGAATGATTCTCTAGTCGTCAAACAGTGT
TTGCAACTGTGGCTTTCAGGTGTTGCTTTACTTTCTTCCATCTGTGTTAT
ACTCCCTATTATCAGCGCTCCAATCTTAGTCGACTGTGCTAACCT
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCTGTCAAAAAGGTTGCAGCAGTGA
GAGAGAGCTCTTTGACACTTAAGCGAGCGCCTCTGCTATCAGATGAAGAA
TTCGAGAAAGCGTTAAGACGCTCAGTTCACTCCACTGCGCTCCATAAAGA
ACACCGGTCAAGACCGCAGCTTTGTGGGGTGTGTGCTTGAAAGTTTAGGA
CAAAAAATACAGTCAGGCCTATCTCAGACCACATACAAACACTTCGATGC
CCCCCCACCCCCGCCCCCAGAGCTCGAACGCAGGACTCTGGCTTAGCTCG
CCACCCTGCCACCTTGCGCGGCCGGGTCGGAAAGTGCTATCCCGGGCTTC
TCGCGGCAGCGCTCCCCGCTCTAGCCCTGCCCCCCGCCGGGTCCGCCAAG
CTAAAGAGCAAAAAGTCCGCCCGGGCCCGCCTCCTTCTAAAGCATCTCTG
GAGACAGCCTGGTGGCAGGGGAAAGAGCACAGAGTCTCACGGGCAGAGGG
TCTTTGATCCCCACCTACTGTCCCAACAGTTTCACCTGCGATTGATTAAC
AGTCTGTAACATACAGAGAAAGACAGGGCTGGAACCCTACCCGTCGGAAA
CGTGCCCAAACACGGGTAAACAAATTCTCTATCTTCCACCCTTTTCCCGG
CTTCTGGTTGGCCTGAATATTATTCCCCCACAGCGGGACCTTTACCCAGT
GCGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_h02.b1 MSMg01no407_h02.b1 CHROMAT_FILE:
MSMg01no407_h02.b1 PHD_FILE: MSMg01no407_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:05 2005
         (479 letters)



>mm_chr15_97998828_97999706
          Length = 879

 Score =  920 bits (476), Expect = 0.0
 Identities = 476/476 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcgcgatgcttccaaagtccttgactctacaaatccttctgtgagggagtctctc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ggaattcgcgatgcttccaaagtccttgactctacaaatccttctgtgagggagtctctc 620

                                                                       
Query: 64  tccctgacctataaggaccacgtttgaagtgaagaacactgcaccgcactgttcagtccc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tccctgacctataaggaccacgtttgaagtgaagaacactgcaccgcactgttcagtccc 560

                                                                       
Query: 124 ctcgggttaagcacttggaaacccaaagccagcgcgggtagttggttccctggtggggtc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctcgggttaagcacttggaaacccaaagccagcgcgggtagttggttccctggtggggtc 500

                                                                       
Query: 184 tccctcacagagaggcctcgccctccagctgcagcagggtaatgtcaggaaggtcggggg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tccctcacagagaggcctcgccctccagctgcagcagggtaatgtcaggaaggtcggggg 440

                                                                       
Query: 244 gctccacaagtggcccatcctccccaaggagaccggggctctcagagagctcgcagtgac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gctccacaagtggcccatcctccccaaggagaccggggctctcagagagctcgcagtgac 380

                                                                       
Query: 304 tggtgggtgtggcggggttaggtgtctctttctcctcttcgtcctcgtcttcatcaggat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tggtgggtgtggcggggttaggtgtctctttctcctcttcgtcctcgtcttcatcaggat 320

                                                                       
Query: 364 cacgacccagcaagccgctgtcctcgatcccaggcgaaggtgtctctggttcatggggaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cacgacccagcaagccgctgtcctcgatcccaggcgaaggtgtctctggttcatggggaa 260

                                                                   
Query: 424 cacttgggaagctccccttgccgccggccacgcccaagcctccctggcggggcgca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cacttgggaagctccccttgccgccggccacgcccaagcctccctggcggggcgca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no407_h02.g1 MSMg01no407_h02.g1 CHROMAT_FILE:
MSMg01no407_h02.g1 PHD_FILE: MSMg01no407_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:05 2005
         (543 letters)



>mm_chr15_97833164_97834106
          Length = 943

 Score = 1027 bits (531), Expect = 0.0
 Identities = 540/543 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgtcaaaaaggttgcagcagtgagagagagctctttgacacttaagcgagcgcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgtcaaaaaggttgcagcagtgagagagagctctttgacacttaagcgagcgcctc 260

                                                                       
Query: 61  tgctatcagatgaagaattcgagaaagcgttaagacgctcagttcactccactgcgctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctatcagatgaagaattcgagaaagcgttaagacgctcagttcactccactgcgctcc 320

                                                                       
Query: 121 ataaagaacaccggtcaagaccgcagctttgtggggtgtgtgcttgaaagtttaggacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaagaacaccggtcaagaccgcagctttgtggggtgtgtgcttgaaagtttaggacaa 380

                                                                       
Query: 181 aaaatacagtcaggcctatctcagaccacatacaaacacttcgatgcccccccacccccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatacagtcaggcctatctcagaccacatacaaacacttcgatgcccccccacccccg 440

                                                                       
Query: 241 cccccagagctcgaacgcaggactctggcttagctcgccaccctgccaccttgcgcggcc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct: 441 cccccagagctcgaacgcaggactctggcttagctcgccaccctgccaccctgcgcggcg 500

                                                                       
Query: 301 gggtcggaaagtgctatcccgggcttctcgcggcagcgctccccgctctagccctgcccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggtcggaaagtgctatcccgggcttctcgcggcagcgctccccgctctagccctgcccc 560

                                                                       
Query: 361 ccgccgggtccgccaagctaaagagcaaaaagtccgcccgggcccgcctccttctaaagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccgccgggtccgccaagctaaagagcaaaaagtccgcccgggcccgcctccttctaaagc 620

                                                                       
Query: 421 atctctggagacagcctggtggcaggggaaagagcacagagtctcacgggcagagggtct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atctctggagacagcctggtggcaggggaaagagcacagagtctcacgggcagagggtct 680

                                                                       
Query: 481 ttgatccccacctactgtcccaacagtttcacctgcgattgattaacagtctgtaacata 540
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgatccccacctactgtccaaacagtttcacctgcgattgattaacagtctgtaacata 740

              
Query: 541 cag 543
           |||
Sbjct: 741 cag 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)