BAC Information

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BAC

Clone NameMSMg01-407K24
Chromosome15 (Build37)
Map Location 68,562,454 - 68,562,910
singlet/doubletsinglet
Overlap genenone
Upstream geneZfat1, LOC100041000, EG665945
Downstream geneEG633752, Khdrbs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407K24.T7 (MSMg01no407_k24.b1)MSMg01-407K24.TJ (MSMg01no407_k24.g1)
ACCAG505586AG505587
length750783
length of high quality
(start - end)		473 (32 - 504)401 (75 - 475)
definitionCHROMAT_FILE: MSMg01no407_k24.b1 PHD_FILE: MSMg01no407_k24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:24 2005CHROMAT_FILE: MSMg01no407_k24.g1 PHD_FILE: MSMg01no407_k24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAA
TTCACCTCTGTTTGCATTGAGTACAGCACTTTGCATAGACTGTCACTCTC
AAAACAGCAAATGAAATCTTCAGAAATGAACTTTGTCTGAGTCCCTTATA
CATTAGTATGACATTGAAAGTGTATTCCCTGGCTCTGTTTAGTTTCTCTC
CTTGTAAAAGCTTGTTTGAGTCAAGAAACATGCAACAATAAAGACAACAT
TGGGGAGAATACAGAGGATACATTAAAGGACAGCCAGCCTCTGTGAAAAG
ACTAGCTAAACCCATGCTGTCTTCCTAACCTAGGCAGTCTCCTCTTGTGC
ATTCCACTACTCCTTTGAGCACCCAGGAGAATAGGATCCCAGCAGGCGCT
CTGTTCTCTTCACACCTACATCTCTATCTTGCCAGCCAGAGGCAGTTTAT
TTCTTTGTTGCTGTGCTGAGAGGCACAGCCTTGTTTGGAGAGAAGTGTGA
ACAAACAGACCCGAGGCAATTCCTCTTCTCTTTAGCCTCCCCCAGGCCCA
ACAGCTGCTGGTCCCTCCTTCTCTCTCCTTTTCTCCTCAGNTCTTTCTAA
AATGCACAAGGGGAAAGTTCTTAATTTTTCCAAAATCCTGCTTAGTTCTA
CAACCTAAGGTTGGGTTCTTCCTCTGTGGAATGTGTAAAAAAATGGGCTC
CCCATGTAGCCAATTTGGCGAAGAAAAAAATGGAAGGCAGTGTTATCCAA


GATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTCTTGCTTGAGAGAAGTGGGTGTA
TTCCCAAATTACAGCTTCAAGTGGCAGAGAGAAAGAGAGATAGATAGATA
GATAGATAGATAGATAGATAGATAGAGAGAGAGAGAGAGAGAGAGAGACA
GAGACAGAGACAGAGACAGAGAGACAGAGACAGAGACAGACAGAGACAGA
GAGAGAGACAGAGATGCAGAGACAGACAGAGACATATAATGATAGTCAAA
GAGACAGAGACACAGAGCTAATTGAGAAAAGCATGGGCTTTTGAAACCTC
AAAGCTCACTCTCCAGTGACATACTTCCTCCAACAAGGCCACGCCTTCCA
ATCCTTCCCAAACAGTTTCACCAATTGAGGACCTAGTATCTAAACATATG
AAGCCATGAAGATCATTTTGATTCAAACCATCACATCCACCAAATTAAAT
GTAAATATCAACTAAATCAACAGGTTCACAGAAACATCAAAGGTAATCCT
TTGAATAAATATCTATGTAAAATGACCCCGTAAAGTTAATATTTGAAGTT
ATATCAACTCCCCCTCCCCAGAAGCCCTGACAGGCGAGGAAGAACTATGC
GGCAGCTTCTTTTCCAGAAGGGTTGGGGACTTGGCTCCCAAGAAAACCAT
TTTTGTCCTTTGAAAAACCGGATTGTTTTTTCTAACAAGGGGGTTTTTTT
TGGGGAGGGGGTTATATGGGGGCTACCGGGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_k24.b1 MSMg01no407_k24.b1 CHROMAT_FILE:
MSMg01no407_k24.b1 PHD_FILE: MSMg01no407_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:24 2005
         (473 letters)



>mm_chr15_68562238_68563110
          Length = 873

 Score =  845 bits (437), Expect = 0.0
 Identities = 452/457 (98%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattcacctctgtttgcattgagtacagcactttgcatagactgtcactctcaaaacag 76
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattcacctctgcgtgcattgagtacagcactttgcatagactgtcactctcaaaacag 276

                                                                       
Query: 77  caaatgaaatcttcagaaatgaactttgtctgagtcccttatacattagtatgacattga 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 caaatgaaatcttcagaaatgaactttgtctgagtcccttatacattagtatgacattga 336

                                                                       
Query: 137 aagtgtattccctggctctgtttagtttctctccttgtaaaagcttgtttgagtcaagaa 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aagtgtattccctggctctgtttagtttctctccttgtaaaagcttgtttgagtcaagaa 396

                                                                       
Query: 197 acatgcaacaataaagacaacattggggagaatacagaggatacattaaaggacagccag 256
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 acattcaacaataaagacaacattggggagaatacagaggatacattaaaggacagccag 456

                                                                       
Query: 257 cctctgtgaaaagactagctaaacccatgctgtcttcctaacctaggcagtctcctcttg 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cctctgtgaaaagactagctaaacccatgctgtcttcctaacctaggcagtctcctcttg 516

                                                                       
Query: 317 tgcattccactactcctttgagcacccaggagaataggatcccagcaggcgctctgttct 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tgcattccactactcctttgagcacccaggagaataggatcccagcaggcgctctgttct 576

                                                                       
Query: 377 cttcacacctacatctctatcttgccagccagaggcagtttatttctttgttgctgtgct 436
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 577 cttcacacctacatctctatcttgccagccagaggcagtttgtttctttgttgctgtgct 636

                                                
Query: 437 gagaggcacagccttgtttggagagaagtgtgaacaa 473
           ||||||| |||||||||||||||||||||||||||||
Sbjct: 637 gagaggcgcagccttgtttggagagaagtgtgaacaa 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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