BAC Information

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BAC

Clone NameMSMg01-411A24
Chromosome15 (Build37)
Map Location 35,391,352 - 35,541,064
singlet/doubletdoublet
Overlap geneVps13b, EG666183
Upstream geneBC030476, Hrsp12, Pop1, Npal2, Kcns2, Stk3, Osr2
Downstream geneCox6c, Rgs22, Fbxo43, 1700074I03Rik, Polr2k, Spag1, Rnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik, Pabpc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411A24.T7 (MSMg01no411_a24.b1)MSMg01-411A24.TJ (MSMg01no411_a24.g1)
ACCAG508164AG508165
length790756
length of high quality
(start - end)		525 (44 - 568)470 (57 - 526)
definitionCHROMAT_FILE: MSMg01no411_a24.b1 PHD_FILE: MSMg01no411_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:59 2005CHROMAT_FILE: MSMg01no411_a24.g1 PHD_FILE: MSMg01no411_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,540,544 - 35,541,064)(35,391,352 - 35,391,821)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCACATTTTGAACTTTAAAAATAAGTAAATACAGAAAGAGCTTCAAAT
CTCCAATTAAATAACTTCCACTTTATCCCATTAATCATTTCTGTAATTTT
CTACAAAGGTTCTCAATAAAGGTTCTATTTGAATTACTGATGGACTTTCA
AGTGAGTCAGAAATTAACCATTCAATTTCAAATATATTTTTGGCTTACAG
CTAGCCAACCTATTTATGAAGAGTTATCTATAAACTTCATTCAGACTACA
AGTATTATAGTAAGCTCGGTCCTTTACACATGCCATGCTAGACAGTGGGA
CTGAGCAGGAGTAAGAGGGTTCAGATCTATTCTCCTCACTGTTGTAGGGA
AAGCTCAAGATGAATAGAAATAACAGAGGTCAGGCTAAGGATTATGATGA
GAGGGAAAGATAAATGAATGAAAACAGGGAGAGAAGGCTAGAAAAGAGAC
ACCTGCAAACCCTGCAGTGGGCAGCCTAGTATCCAAAAGGAGACCTGCTA
CAACAGAAATTATTTTAAAAGTCAGTCACAGAAGACCATACACTATGACT
CCATTTATATGAAGTATCTAANATACCCAAATTATACGTATATAATGCAG
ACTAAGAATTGCTACCAGGGCGAGTCTAGAATTAAAGGAGAGCATGATGG
TTCCCCAAATATGTGACATTCTACAGAAATTACTTAGATACTTTAAAAGA
AATTTTGCCCACGGGAATTAATCCTTAAAAGTGGGTAGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCATGAAGTATTATCTAATTTCATACTTTCATCTTTTTTGCTTA
GATGATACAATTCGATTTTTTAAATTTTATAGTTATAGTTTAATTTTATT
AAATTAACAAAATTTGACTTGAGAGGCTATGTATTTAGTAGACAGACAAT
CTAATGTCAGGTAGGATCAGTTGAGTAGTATGCAGATATTCTAATCCTGC
TTTAATCGAACTGTGGATATGAGCTACAGTGGTTAATCTTGATTGTCAGC
TTGCTGGGGTTATTTAGATTCACACAGAAACAAATCTGAGAGACGGTCTG
TGAAGAATTACTTAGGTTATGTTAGTTGTTGTTGGAAGACCCATCCTAAA
TGTGGTTGTTATTATTCTATGGGCTGAGATCCTGGACTGAATAAAAAGCA
GAAAGTGGGCAAGCACCAGCATCCATTGCTTTTTGTTTTCTTTCTTTCTT
TTTTTATGTATAATCTTTTTTTGTTTTGGTTTGTTTTGGTTTGGTTTTAT
TGGATATTTTCTTANNTATCCTCTTTCCTGCCCCAACCCTGAAATCCCTT
ATTCCATCCCCCTTCCCCTACTTCTATGAAGGTGTTGTCCCCTCTTTTCT
CCCGGCATTCCCCTATACTATGGCATTGAACCTTCCCCGGAACCATGGCT
TTTTTTCTCCCTGATGCCCCACATGTCTTCCTCCGGCTATACCGCGGCTG
AATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_a24.b1 MSMg01no411_a24.b1 CHROMAT_FILE:
MSMg01no411_a24.b1 PHD_FILE: MSMg01no411_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:59 2005
         (525 letters)



>mm_chr15_35540340_35541264
          Length = 925

 Score =  977 bits (505), Expect = 0.0
 Identities = 517/521 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacattttgaactttaaaaataagtaaatacagaaagagcttcaaatctccaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gaattccacattttgaactttaaaaataagtaaatacagaaagagcttcaaatctccaat 666

                                                                       
Query: 65  taaataacttccactttatcccattaatcatttctgtaattttctacaaaggttctcaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 taaataacttccactttatcccattaatcatttctgtaattttctacaaaggttctcaat 606

                                                                       
Query: 125 aaaggttctatttgaattactgatggactttcaagtgagtcagaaattaaccattcaatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aaaggttctatttgaattactgatggactttcaagtgagtcagaaattaaccattcaatt 546

                                                                       
Query: 185 tcaaatatatttttggcttacagctagccaacctatttatgaagagttatctataaactt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 545 tcaaatatatttttggcttacagctagccaacctatttatgaagagttacctataaactt 486

                                                                       
Query: 245 cattcagactacaagtattatagtaagctcggtcctttacacatgccatgctagacagtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cattcagactacaagtattatagtaagctcggtcctttacacatgccatgctagacagtg 426

                                                                       
Query: 305 ggactgagcaggagtaagagggttcagatctattctcctcactgttgtagggaaagctca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ggactgagcaggagtaagagggttcagatctattctcctcactgttgtagggaaagctca 366

                                                                       
Query: 365 agatgaatagaaataacagaggtcaggctaaggattatgatgagagggaaagataaatga 424
           |||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 365 agataaatagaaataacagaggtcaggatatggattatgatgagagggaaagataaatga 306

                                                                       
Query: 425 atgaaaacagggagagaaggctagaaaagagacacctgcaaaccctgcagtgggcagcct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 atgaaaacagggagagaaggctagaaaagagacacctgcaaaccctgcagtgggcagcct 246

                                                    
Query: 485 agtatccaaaaggagacctgctacaacagaaattattttaa 525
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agtatccaaaaggagacctgctacaacagaaattattttaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no411_a24.g1 MSMg01no411_a24.g1 CHROMAT_FILE:
MSMg01no411_a24.g1 PHD_FILE: MSMg01no411_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:59 2005
         (470 letters)



>mm_chr15_35391152_35392021
          Length = 870

 Score =  886 bits (458), Expect = 0.0
 Identities = 467/470 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgaagtattatctaatttcatactttcatcttttttgcttagatgatacaattcgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatgaagtattatctaatttcatactttcatcttttttgcttagatgatacaattcgat 260

                                                                       
Query: 61  tttttaaattttatagttatagtttaattttattaaattaacaaaatttgacttgagagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttaaattttatagttatagtttaattttattaaattaacaaaatttgacttgagagg 320

                                                                       
Query: 121 ctatgtatttagtagacagacaatctaatgtcaggtaggatcagttgagtagtatgcaga 180
           ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 321 ctatgtatttagtagacagacaatctaatatcaggtaggatcagttaagtagtatgcaga 380

                                                                       
Query: 181 tattctaatcctgctttaatcgaactgtggatatgagctacagtggttaatcttgattgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattctaatcctgctttaatcgaactgtggatatgagctacagtggttaatcttgattgt 440

                                                                       
Query: 241 cagcttgctggggttatttagattcacacagaaacaaatctgagagacggtctgtgaaga 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caacttgctggggttatttagattcacacagaaacaaatctgagagacggtctgtgaaga 500

                                                                       
Query: 301 attacttaggttatgttagttgttgttggaagacccatcctaaatgtggttgttattatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attacttaggttatgttagttgttgttggaagacccatcctaaatgtggttgttattatt 560

                                                                       
Query: 361 ctatgggctgagatcctggactgaataaaaagcagaaagtgggcaagcaccagcatccat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctatgggctgagatcctggactgaataaaaagcagaaagtgggcaagcaccagcatccat 620

                                                             
Query: 421 tgctttttgttttctttctttctttttttatgtataatctttttttgttt 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgctttttgttttctttctttctttttttatgtataatctttttttgttt 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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