Query= MSMg01no411_o20.b1 MSMg01no411_o20.b1 CHROMAT_FILE:
MSMg01no411_o20.b1 PHD_FILE: MSMg01no411_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:08 2005
(559 letters)
>mm_chr15_53649092_53650050
Length = 959
Score = 1058 bits (547), Expect = 0.0
Identities = 553/555 (99%)
Strand = Plus / Plus
Query: 5 gaattccaatataccccaggaacattataaactatggttgctgttataggtgttgcataa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatataccccaggaacattataaactatggttgctgttataggtgttgcataa 264
Query: 65 aggaatctttctgctccttaaatgtccagcaaaatagtgggccctataaaatgtgtctgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggaatctttctgctccttaaatgtccagcaaaatagtgggccctataaaatgtgtctgt 324
Query: 125 gaatgctccaggcctttgcccttgaaaagttttatatcaagctgagatagatgcaaagat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaatgctccaggcctttgcccttgaaaagttttatatcaagctgagatagatgcaaagat 384
Query: 185 aagctaaaaactaaatgatgaggtcaaacaaaggagagaacagagctgggaacattaagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagctaaaaactaaatgatgaggtcaaacaaaggagagaacagagctgggaacattaagt 444
Query: 245 tttttggctgcatttccttttatttcctttgatagaaaacaaccctctgcagagtcacag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttttggctgcatttccttttatttcctttgatagaaaacaaccctctgcagagtcacag 504
Query: 305 aaccctggtgggtcaatgatatgccccaggttgtgacctgggtataacaaatggggtgtg 364
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaccctggtgggtcaatgacatgccccaggttgtgacctgggtataacaaatggggtgtg 564
Query: 365 cgggggaggtgtatttttgagacattgaattaatacagggagataacaaggtttcctttc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cgggggaggtgtatttttgagacattgaattaatacagggagataacaaggtttcctttc 624
Query: 425 atctcagctggcagaaatgcataaacctacacccacctttcatgagaatgaagccaagcc 484
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atctctgctggcagaaatgcataaacctacacccacctttcatgagaatgaagccaagcc 684
Query: 485 tggaaaaccccttgtaggagtgcatctagagactgtatgtgtgctacatcaatagatcca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tggaaaaccccttgtaggagtgcatctagagactgtatgtgtgctacatcaatagatcca 744
Query: 545 ggaagtgcactgtta 559
|||||||||||||||
Sbjct: 745 ggaagtgcactgtta 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_o20.g1 MSMg01no411_o20.g1 CHROMAT_FILE:
MSMg01no411_o20.g1 PHD_FILE: MSMg01no411_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:08 2005
(532 letters)
>mm_chr15_53792767_53793692
Length = 926
Score = 967 bits (500), Expect = 0.0
Identities = 522/532 (98%), Gaps = 6/532 (1%)
Strand = Plus / Minus
Query: 1 agtcattcattcaaatacgttataaagcatgtgttattgtgagacactgttataggagac 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 agtcattcattcaaatacattataaagcatgtgttattgtgagacactgttataggagac 667
Query: 61 tgaagtccaatcaaaaaaagtaagatccaagtcccacacagactactatggaagactgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tgaagtccaatcaaaaaaagtaagatccaagtcccacacagactactatggaagactgag 607
Query: 121 agttaggttggtaaagaatgacacagggcacattgacaaacaaggaaagcatgatactgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 agttaggttggtaaagaatgacacagggcacattgacaaacaaggaaagcatgatactgc 547
Query: 181 agtagatgctatgatgggtaggattgaatgagttaaatccacgcacacattaaaggggca 240
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 546 agtagatgctatgatgggtaggattgaatgagttaaatccacacacacattggaggggca 487
Query: 241 gaaaagcttcccagaggctttggaattaaaggtgagatctgaaaggataatgagaaccac 300
||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 486 gaaaagcttcccagaggcttt----tt--aggtgagatctgaaaggataatgagaaccac 433
Query: 301 atacacagtggtgctggtggaggtagcagaggcagtagctatgacatagttaatggaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atacacagtggtgctggtggaggtagcagaggcagtagctatgacatagttaatggaaca 373
Query: 361 tggagaatattctctgcaggaaatatgcaaagatctagacaaaacaggtcaatcaaatag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tggagaatattctctgcaggaaatatgcaaagatctagacaaaacaggtcaatcaaatag 313
Query: 421 ccaaaagcacttcagagtatctgaaaatactgaaggttatcaataaatattgagtatgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ccaaaagcacttcagagtatctgaaaatactgaaggttatcaataaatattgagtatgca 253
Query: 481 taaaactttggattctctgttttctaaactttgattaatttttatggcatgt 532
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 taaaactttggattctctgttttctaaactttgattaatttttatggcatgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 926
Length adjustment: 10
Effective length of query: 522
Effective length of database: 916
Effective search space: 478152
Effective search space used: 478152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
