BAC Information

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BAC

Clone NameMSMg01-414K04
Chromosome15 (Build37)
Map Location 100,637,523 - 100,637,771
singlet/doubletsinglet
Overlap geneSlc4a8
Upstream geneLima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6
Downstream geneScn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414K04.T7 (MSMg01no414_k04.b1)MSMg01-414K04.TJ (MSMg01no414_k04.g1)
ACCAG510884AG510885
length777806
length of high quality
(start - end)
94 (79 - 172)251 (74 - 324)
definitionCHROMAT_FILE: MSMg01no414_k04.b1 PHD_FILE: MSMg01no414_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:44 2005CHROMAT_FILE: MSMg01no414_k04.g1 PHD_FILE: MSMg01no414_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCTCATAATTTGCGGCCGCTAAACGAATACTATATTTCCGACTCCGCGG
AATTCGGNTACGTGTGTCTCAAAGTTACTGGCAGAAGCCACTATTGATTT
TAGCTCAGATAAGTCTTTCCCAGCAGCCGGAAGCTAAGGAGAACTCCTCC
CATTAATGATCTCCTGTACTCTGGGTAGAAGTAGGAGCCGCCCTAAAGCC
CTTGAGGTGACGCTGCACCCACGAGCACTTGACTCCCCTGCCTCAGCTCC
ACATGTTTGTCTTCTGCTGCTGAGTCAGAGGGTCTTAGGCGGTGGGTGGT
TCTCAACCTTCCTAACACGGGGTTTTCGATGCCTTCTGCAACACCNCATN
TTGCGCTGANCACCATTCTTTACCACCCCCCATTCCTACTTCATAACTGT
GATTCTGCTAGTTATGACTCATGATGTAAATATCTGATTGCAGGATGTCT
GATACGTGACCCCTTCCACGGTGTGTATTGTTACTCTCCCCGGATTTTCC
TCTCGTTCTTTATTTTCTCTTATATTTTACGTTTCCGTCTGGTTCCTATC
TCCTCCTCCCCTTCTTCTTTTTTTTGTTCTTCTTTCCCTCGCCGCCTGTT
TATCTCATCTCCTTCCCCCCGCGTTTACTCTCTCTATTGCTCTTCTGTCC
CATGTTTTTTTCCCGCATTCTTTAGGCATCTATTTTCTTTTTTTTTTTCC
CCTTCTACTCCTTGTGTACGTCGTTCTTATTCACACCGATCTCTCCCTTC
ATCTCCATATTTTATCTCCATTGTGTG
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCTAATTCTCTGGACACCCTCCTCCTCATCTCCCCA
CTAGCTGTGAGCCTGAAGTCTTTCGCTTAGTGTTATATGGCCTACTCCCG
CCAGCTCACTGAGGGTGACTCTCTCCCCACAGAAAGGCTGTGGCTACCAC
CTGGACCTGCTCATGGTGGCCGTCATGCTGGGAGTTTGCTCCATCATGGG
CCTGCCTTGTTTTGTGGCCGCGACCGTCCTGTCCATTACCCATGTGAACA
GCCTCAAGCTGGAATCCGAATGTTTTTTCTTGGGGAGCAGCCCAAGTTCT
TGGGCATCCGGGAACAGACAGTCCCAGGGCTTATGATCTTCGTGCTGATG
GGCTGCTCAGTCTTCATGACAGCTGTCCTAAAGGTATTCCTTCACTGCGA
TGCCAAGTATACAATGGTTGTCTGGCGTGTGCCCCTTTCTCCCCCTTTTC
TTCTCGCATTCCGTCCTTTATCTCTTTTGTTATTCTTTTTTTTCTCCGTT
TTATTCTATTTTCTCCGTTCTCCTCCTCCCCGTTCCTCTTGCCCCCTTTC
GCCCTACCGCTTCTTCTTTCGTTCTTTTTACATTTCTTCTCTTTCTGTTT
CTCGCTTATCTTTTCTTCTTATTCTATTTACTCCTTCTTTTTTTTTTTTC
TTCTTTCCTCTTTTTTCCTCATTTTTTCTACTCTTTTTCTTTTTCTCTCC
GTTATTCCTNTCCTCCTTTTACTCTCTTTTCCCATCTCTCTTCACCACTT
TCCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_k04.g1 MSMg01no414_k04.g1 CHROMAT_FILE:
MSMg01no414_k04.g1 PHD_FILE: MSMg01no414_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:44 2005
         (251 letters)



>mm_chr15_100637323_100637973
          Length = 651

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggacaccctcctcctcatctccccactagctgtgagcctgaagtctttcgcttagtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ctggacaccctcctcctcatctccccactagctgtgagcctgaagcctttcgcttagtgt 260

                                                                       
Query: 61  tatatggcctactcccgccagctcactgagggtgactctctccccacagaaaggctgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatatggcctactcccgccagctcactgagggtgactctctccccacagaaaggctgtgg 320

                                                                       
Query: 121 ctaccacctggacctgctcatggtggccgtcatgctgggagtttgctccatcatgggcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaccacctggacctgctcatggtggccgtcatgctgggagtttgctccatcatgggcct 380

                                                                       
Query: 181 gccttgttttgtggccgcgaccgtcctgtccattacccatgtgaacagcctcaagctgga 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccttggtttgtggccgcgaccgtcctgtccattacccatgtgaacagcctcaagctgga 440

                    
Query: 241 atccgaatg 249
           |||||||||
Sbjct: 441 atccgaatg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)