BAC Information

Click to search

BAC

Clone NameMSMg01-415A08
Chromosome15 (Build37)
Map Location 71,402,487 - 71,587,724
singlet/doubletdoublet
Overlap geneLOC100040847
Upstream geneLOC383051, 1700010C24Rik
Downstream geneCol22a1, Kcnk9, 1810044A24Rik, LOC665621
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415A08.T7 (MSMg01no415_a08.b1)MSMg01-415A08.TJ (MSMg01no415_a08.g1)
ACCAG511178AG511179
length720741
length of high quality
(start - end)
531 (39 - 569)242 (72 - 313)
definitionCHROMAT_FILE: MSMg01no415_a08.b1 PHD_FILE: MSMg01no415_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:16 2005CHROMAT_FILE: MSMg01no415_a08.g1 PHD_FILE: MSMg01no415_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,587,197 - 71,587,724)(71,402,487 - 71,402,725)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TCTTTCGCTTATCTCTGCCCATTCTTGGTGGATAGTGTTTCTTTATTATC
TCCCTTGGAAGATCATGCGGCAGCTGGTAAACAATGTGGTCAAGATTTGA
CTGGTGCCCATTTAGGGAGTAGACCTTAAAGTGGCCTCACAGCAAAATCT
CTGGACATAGAATCTATGAACTAAGACAAAGTAAAGATGTGTTTGATGGA
CAATAATGTCCCATTTGCACAGTATCTGCTGAAACATCAATTATATCCCA
TTTGATTATTGTTTTCCTTTTATCCCCAAATTTCTGGATAATTGTGTCAA
TTTTCCAATTTTCTCATTGTGTTTAAACATTGTTATGGCTTTCTCTTTTT
CTCAAAGGAAAATTGGACAACAAACAGTGAAGCAGACATTGGACCAGCCA
TTATTTAAAGAAATAGAGGGACTGCTGGTAATTTGTGTCATTTAAGCTGA
ACCTGAGACCTCAATTCCCACTCTCCGAGTGAAGCAGCTTAATTGAGGAG
CATTCTTTGCAAATAGACAAAGAAGGAGTAATAGGCAGGAGTCTGATCAG
AAATAATGACAGGGAGTTGAGTTCTTTAATCGCGCGTTCTAAATGTGCTT
TCTTTGGAGAAACATAAGATAACCCATGGCCCAATAATTTACCCTTAAGC
GTTACCGTTAAAAGCTTGTG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCATCATTACCAGTTGCTGAAGAAGACAA
ATCATGTTCTACCCTTCTCCAAATACCCCCCCCCAAACTAACATGGTTAA
ATATCAATAAATGTCATAGTAATTAATAGACATGGATGGATGGAGGAATA
GGTGACTGGATGGAAAGATGGATGATTAGATGAAAGGAGAAATGGATGTA
TAGAAGAAAATCCCAGTGATACAGAGTCCTCTGGTAAACAACAGAGCTAT
ACAATCCAAAATCTACTACTATAGCTCTGTGAGTGACCTAGAACCCACAA
ATTATTTCTCCTACCTCCAGAAGTTGCAGCATATAATTGGAATGTACGCA
TGTACAACCTTTTGCAATACTCATTTCTCATTCCTAATATCATGAACTGA
CCCTCCTGACTCTATGGCATGACCTGCTCCCACCCCCCTGTTTTGAACCT
ATCTCCAGCTTGCTATGTCTCTCCGACCCATTCCTGAATATTCTATACTC
CTTCCCCCGTTTTTTTTTCCCTTTCCTCTCTTCTTTCTCCATTCTACCTA
CCCTTCCTGCTCCCCACCTTTTCCTTTCTTCCCCCCGCTCTCATCCTCTT
TTCTTTTCTTTTCCTTTCCCCCCCTTTTCCCCGTTCCTTTACCTCACCTC
TTCTCTTTTCGTCCTTTGTTATTCCTACCCTTTTATCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_a08.b1 MSMg01no415_a08.b1 CHROMAT_FILE:
MSMg01no415_a08.b1 PHD_FILE: MSMg01no415_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:16 2005
         (531 letters)



>mm_chr15_71586994_71587924
          Length = 931

 Score = 1006 bits (520), Expect = 0.0
 Identities = 526/528 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctctttcgcttatctctgcccattcttggtggatagtgtttctttattatct 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ggaattctctctttggcttatctctgcccattcttggtggatagtgtttctttattatct 672

                                                                       
Query: 64  cccttggaagatcatgcggcagctggtaaacaatgtggtcaagatttgactggtgcccat 123
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 cccttggaagatcatgcagcagctggtaaacaatgtggtcaagatttgactggtgcccat 612

                                                                       
Query: 124 ttagggagtagaccttaaagtggcctcacagcaaaatctctggacatagaatctatgaac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ttagggagtagaccttaaagtggcctcacagcaaaatctctggacatagaatctatgaac 552

                                                                       
Query: 184 taagacaaagtaaagatgtgtttgatggacaataatgtcccatttgcacagtatctgctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 taagacaaagtaaagatgtgtttgatggacaataatgtcccatttgcacagtatctgctg 492

                                                                       
Query: 244 aaacatcaattatatcccatttgattattgttttccttttatccccaaatttctggataa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aaacatcaattatatcccatttgattattgttttccttttatccccaaatttctggataa 432

                                                                       
Query: 304 ttgtgtcaattttccaattttctcattgtgtttaaacattgttatggctttctctttttc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttgtgtcaattttccaattttctcattgtgtttaaacattgttatggctttctctttttc 372

                                                                       
Query: 364 tcaaaggaaaattggacaacaaacagtgaagcagacattggaccagccattatttaaaga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tcaaaggaaaattggacaacaaacagtgaagcagacattggaccagccattatttaaaga 312

                                                                       
Query: 424 aatagagggactgctggtaatttgtgtcatttaagctgaacctgagacctcaattcccac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aatagagggactgctggtaatttgtgtcatttaagctgaacctgagacctcaattcccac 252

                                                           
Query: 484 tctccgagtgaagcagcttaattgaggagcattctttgcaaatagaca 531
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tctccgagtgaagcagcttaattgaggagcattctttgcaaatagaca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no415_a08.g1 MSMg01no415_a08.g1 CHROMAT_FILE:
MSMg01no415_a08.g1 PHD_FILE: MSMg01no415_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:16 2005
         (242 letters)



>mm_chr15_71402287_71402925
          Length = 639

 Score =  445 bits (230), Expect = e-129
 Identities = 238/242 (98%), Gaps = 3/242 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatcattaccagttgctgaagaagacaaatcatgttctacccttctccaaatacccccc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 201 tcatcattaccagttgctgaagaagacaaatcatgttctacccttctccaaat---cccc 257

                                                                       
Query: 61  cccaaactaacatggttaaatatcaataaatgtcatagtaattaatagacatggatggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cccaaactaacatggttaaatatcaataaatgtcatagtaattaatagacatggatggat 317

                                                                       
Query: 121 ggaggaataggtgactggatggaaagatggatgattagatgaaaggagaaatggatgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggaggaataggtgactggatggaaagatggatgattagatgaaaggagaaatggatgtat 377

                                                                       
Query: 181 agaagaaaatcccagtgatacagagtcctctggtaaacaacagagctatacaatccaaaa 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agaagaaaatccaagtgatacagagtcctctggtaaacaacagagctatacaatccaaaa 437

             
Query: 241 tc 242
           ||
Sbjct: 438 tc 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 639
Length adjustment: 9
Effective length of query: 233
Effective length of database: 630
Effective search space:   146790
Effective search space used:   146790
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)