BAC Information

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BAC

Clone NameMSMg01-415L10
Chromosome15 (Build37)
Map Location 53,948,027 - 53,948,476
singlet/doubletsinglet
Overlap genenone
Upstream geneExt1, Samd12, EG665097, EG621631
Downstream geneTnfrsf11b, LOC665280, EG383032, Colec10, Mal2, Nov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415L10.T7 (MSMg01no415_l10.b1)MSMg01-415L10.TJ (MSMg01no415_l10.g1)
ACCAG511707AG511708
length757750
length of high quality
(start - end)		448 (39 - 486)239 (70 - 308)
definitionCHROMAT_FILE: MSMg01no415_l10.b1 PHD_FILE: MSMg01no415_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:10 2005CHROMAT_FILE: MSMg01no415_l10.g1 PHD_FILE: MSMg01no415_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
CTATTTCACATTAATCTCAGATCCAGGGATCTGGTCCTCATCTTCACAGC
TTCTCAGGTTCGCCTCCATCAAGGCATCCACCTTTACATCTTACATACTT
CACATACTTACTTGCATAATGCAGTCCAGATAGTAAAAAATACCCAAAAT
GATTGATAGCTAAGAGGGCAAAGATATCCCACACAAACCAAGCAAGAATA
AATACTCTACAACTCAGTTGACTGAAGACATCAGGGAAAATACAAGACAA
AAAGGGACCATGTGTGCTCAGGATGTGGCCCCACTTTAAAAAAAAAAGAT
CCGAGTCCTATATTTAGAAGACCCCCAAATCTGGCTCCCATTTTTGAGTC
TGATTTAATGCTTCCTTTTCCTGCGAAATGAAGGAAATACTTTTAGAAAC
TAAATATAAAATGTTCTCTTTGGAATGTCCTCCTAGTTCTGATGTTGAAA
GCCAATATGAACACCAACTCCGACTATATAGACACTGTCCACACCACACA
CAGGGTCCTGTCCTTCATCCAGGAAACATTTTTTTTTTGGTCACGATCCT
TGTCCTTCCCATAATATGATTAAATAGTTCCTTTTCCCACCTCTTTTCCA
GGGTTTTCGCAGCCCCTTACCTTCTTTAACCACGGCCGATTTTGAAAAAT
TATATATCTGCCCCCCCGCCTCCGTTTCACCCCCTCTTTCCTCTTATCTT
AACTTCT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTAGGTCCATTGAAATTGCTTATCTGGTTGTC
TGCAAGCAACCACATCTGTATTGGAGCCTCTCAGATATCAAGCTCCTGTC
AGCAAGTACTTCTTGGCCTCAGCAACTGAGCACAGAAACCCCAATGGAGG
AGTTAGGAAAAGGACTGAAGGAACTAAAGGGGTTTGCAACCCCACAGGAA
GAACAATAGCAACAAACCAGACCCCCTCTCCAGAGTTCCCAGGGACTAAG
CCACAAACTCTTTTATTACACATGGAGGGACCCATGGCTCTAGCTGCGTA
TGTAGCAGAGAATTGCCTTATCTGGCATCAATGGAAGGGAAGGCCCTTGA
TCCTGTGAAGGCTCGATGCCCCAGCACAGGAAAATGCTAGGGCAGTGAGG
TAGGAGTGGGTGGGTGGATGCTTTTTTNTNNTTTTTTTCCTCTTTCCCCT
TTTCTTTCTCTTCCCTTTCTTCTCTTTCCCTTTTCCCTCCCCTCTTCTTT
CTCCTTCCCTTTCTCCTCTTTCNTCTCTCCTTTCTCTCCCTTTTCCTTCT
TCTTCCTTCTCTCCTCCCCCCCTCCCCTTCCCGTCCTTTTTTTTTTTCTC
CCTTCCCCTTTCCCCCTCTTTCCTTTCTCCCTCTCCCTCTCCCTTTTTCC
TCCTTTTCCTTCGCTTTTTCCTTTTTCCTATCCTTTTCGCTGCTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_l10.b1 MSMg01no415_l10.b1 CHROMAT_FILE:
MSMg01no415_l10.b1 PHD_FILE: MSMg01no415_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:10 2005
         (448 letters)



>mm_chr15_53947824_53948676
          Length = 853

 Score =  839 bits (434), Expect = 0.0
 Identities = 444/450 (98%), Gaps = 5/450 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttctatttcacattaatctcagatccagggatctggtcctcatcttcacagct 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ggaattcttctatttaacattaatctcagatccagggatctggtcctcatcttcacagct 594

                                                                       
Query: 64  tctcaggttcgcctccatcaaggcatccacctttacatcttacatacttcacatacttac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tctcaggttcgcctccatcaaggcatccacctttacatcttacatacttcacatacttac 534

                                                                       
Query: 124 ttgcataatgcagtccagatagtaaaaaatacccaaaatgattgatagctaagagggcaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ttgcataatgcagtccagatagtaaaaaatacccaaaatgattgatagctaagagggcaa 474

                                                                       
Query: 184 agatatcccacacaaaccaagcaagaataaatactctacaactcagttgactgaagacat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 agatatcccacacaaaccaagcaagaataaatactctacaactcagttgactgaagacat 414

                                                                       
Query: 244 cagggaaaatacaagacaaaaagggaccatgtgtgctcaggatgtggccccacttt---- 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 413 cagggaaaatacaagacaaaaagggaccatgtgtgctcaggatgtggccccactttaaaa 354

                                                                       
Query: 300 -aaaaaaaaaagatccgagtcctatatttagaagacccccaaatctggctcccatttttg 358
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aaaaaaaaaaagatccgagtcctatatttagaagacccccaaatctggctcccatttttg 294

                                                                       
Query: 359 agtctgatttaatgcttccttttcctgcgaaatgaaggaaatacttttagaaactaaata 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 agtctgatttaatgcttccttttcctgcgaaatgaaggaaatacttttagaaactaaata 234

                                         
Query: 419 taaaatgttctctttggaatgtcctcctag 448
           ||||||||||||||||||||||||||||||
Sbjct: 233 taaaatgttctctttggaatgtcctcctag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 853
Length adjustment: 10
Effective length of query: 438
Effective length of database: 843
Effective search space:   369234
Effective search space used:   369234
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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