BAC Information

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BAC

Clone NameMSMg01-416A07
Chromosome15 (Build37)
Map Location 61,417,885 - 61,418,048
singlet/doubletsinglet
Overlap genenone
Upstream geneEG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
Downstream geneMyc, Pvt1, LOC100040584, H2afy3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416A07.T7 (MSMg01no416_a07.b1)MSMg01-416A07.TJ (MSMg01no416_a07.g1)
ACCAG511937AG511938
length759758
length of high quality
(start - end)
164 (65 - 228)352 (56 - 407)
definitionCHROMAT_FILE: MSMg01no416_a07.b1 PHD_FILE: MSMg01no416_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:33 2005CHROMAT_FILE: MSMg01no416_a07.g1 PHD_FILE: MSMg01no416_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCTTGAT
CTTTACCAACAGAAGCAATACCTTGTAATGGCATGATAGTTTTGAACATA
TGAACCTAAATGAAGCATGCTTAAACTAACTTCTCTTGAAAATTATGTAA
ACTATAGGTGAAGCTCTCCAACACATTGTAGTTAAGCTTCTTGCACTTGT
CAAATAAAATTCTATCAAATCTTCTACANTAAAATAATATNNTTCAGTGT
ATATTTTCCAACTAATATNNTCTGAATTAGNANNGTACCTGCCTTACCCC
CCAAGAAAATCCTGGTTGGTATTTTTAAAAAAACCCATTTGTTTCTTTGT
AAAAAGGGGGGCCAAAGGAAAAAAACCCTTTTTTTTTCCCCCNTTCCTGN
GTTCNCGTNNNNNCCTTTTATGGGTCTCAGGGGGGGAGGGGAATTACCCG
TTGGGAAGAACGCTCCCCATTTACAATTCCCTAAAGGGAGGCAGCTAATT
CTCTCTTTTTTTCTTTGGCGAGTAAATATTTCACNTGCCACCCNNAAAAT
CATAAAGAGAAGGCCGTCGAGAGCAATTGAACCTTTTTTCCGCACTCCTC
TTACTTTCCCTCGTTGCGTGGCGCGAGAGTGCTTNCTCCCCACNNNNTCC
TTCNNNNCCTGGGTCNCCCTCTTCCAGGATATAGTGGAGGAAACTTCCTA
TCTTTCTTTCTGTCTTTCCCTCCCTCTGGATAGCTAAGCCGCCGAGAAGG
AAAATGNNN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTTACCACACAAAGGATACAAGTTCTTATCAGCATATCTCATTTT
TTAAAACGTTTAGGTTTTTTAATTTTTAAAAAAATTTTTTAGCAGTGTCA
TTTAAAGATAAAGAGGAGAGGCTTATACTCTTAGAGGGATTTATAGGATG
GATCACAGGACCCCCAACTGAGGAGCTAGAGAAAGTACCCAAGGAGCTAA
AGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACTAGTACC
CTGGATCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGTCTAGTCGG
CCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCA
GTACAGGGGAATGCCAGGGCCTAAAAGTGGGAGTGGGTGGGGAGGTGAGA
GGTAATTTTTTCTTTTTTTTTCCCCTTCTTTCTCCGTCTTTTCCGTCTTT
CCATTCTTTTTTTTCTTCTTTTCTTCTTCTCCCTTCTTCCTTCTCTCTCT
TTTTTTCATTTTTTTTAGTCTTTTTACTTCTTTTTCTTTCATTCTTTTCA
CTCTTTTTCTCTTATTCTTTTTTTTTTCTTTCTTTTTCCCTCTTTCTTCC
TTCCCTTCCTACCTCCATTCTCCTTCTTTATTTTTTCCTCAACAAACGCT
ACTCTTTACGACATCGTTGTTTCTTTCCTACTTGCTTTCTCCCCTCTTGC
TTTATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_a07.b1 MSMg01no416_a07.b1 CHROMAT_FILE:
MSMg01no416_a07.b1 PHD_FILE: MSMg01no416_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:33 2005
         (164 letters)



>mm_chr15_61417685_61418248
          Length = 564

 Score =  310 bits (160), Expect = 4e-89
 Identities = 163/164 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaataccttgtaatggcatgatagttttgaacatatgaacctaaatgaagcatgcttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 gcaataccttgtaatggcatgatagttttgaacatatgaacctaaatgatgcatgcttaa 260

                                                                       
Query: 61  actaacttctcttgaaaattatgtaaactataggtgaagctctccaacacattgtagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actaacttctcttgaaaattatgtaaactataggtgaagctctccaacacattgtagtta 320

                                                       
Query: 121 agcttcttgcacttgtcaaataaaattctatcaaatcttctaca 164
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcttcttgcacttgtcaaataaaattctatcaaatcttctaca 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)