Query= MSMg01no416_b19.b1 MSMg01no416_b19.b1 CHROMAT_FILE:
MSMg01no416_b19.b1 PHD_FILE: MSMg01no416_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:40 2005
(372 letters)
>mm_chr15_87711118_87711887
Length = 770
Score = 632 bits (327), Expect = 0.0
Identities = 357/368 (97%), Gaps = 2/368 (0%)
Strand = Plus / Minus
Query: 5 gaattcctccggggttcactcacccaaacattcaagtaggagagaggaggacaggttgga 64
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gaattcctctgggggacactcacccaaacattcaagtaggagagaggaggacaggttgga 511
Query: 65 aagtggaaaggctccagtgggaagggggagggttcgagaggtgaatgggggtgaacacag 124
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 510 aagtggaaaggctccagtgggaagggggaaggtgcgagaggtgaatgggggtgaacacag 451
Query: 125 aaagaaaaactcattacagacacgtgtaaaatcatcaaagagcaaaaataagtgaatgac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aaagaaaaactcattacagacacgtgtaaaatcatcaaagagcaaaaataagtgaatgac 391
Query: 185 cgaggaatgataatcttccataaaacaggacagctgtagttggcacgctcctgttaacgc 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 390 cgaggaatgataatcttccataaaacaggacagctgtagttggcacgctcctgttaactc 331
Query: 245 agagtctacttaacgagatattagagaatgtcaactctgtaaagtttttaaggtgataaa 304
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 330 agagtctacttaacgagatattagagaatgtcaactctggaaagtttttaaggtgataaa 271
Query: 305 tgacgtaattgaagaggagccattttctcctganactccagacagaaacgannagtcaat 364
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 270 tgacgtaattgaagaggagccattttctcctgaaactccagacagaaacga--agtcact 213
Query: 365 ccatggcc 372
||||||||
Sbjct: 212 ccatggcc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 770
Length adjustment: 9
Effective length of query: 363
Effective length of database: 761
Effective search space: 276243
Effective search space used: 276243
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_b19.g1 MSMg01no416_b19.g1 CHROMAT_FILE:
MSMg01no416_b19.g1 PHD_FILE: MSMg01no416_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:40 2005
(523 letters)
>mm_chr15_87520215_87521130
Length = 916
Score = 942 bits (487), Expect = 0.0
Identities = 510/521 (97%), Gaps = 7/521 (1%)
Strand = Plus / Plus
Query: 1 ctctcaggaatgcacagttgactcaagacataacagccagccactgtcacaagctcgtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctcaggaatgcacagttgactcaagacataacagccagccactgtcacaagctcgtac 260
Query: 61 actgtggtgtcagtgaatgcagagagagcttgaaatttacaatgaagatgccggacatcc 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 actgtggtgtcagtgaatgcagagagagcttgaaatttgcaatgaagatgccggacatcc 320
Query: 121 caagagaggaggtgaccttcagcattgcagggccatctctcaaacacctacctgctcccc 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 caagagaggaggtgaccttcagcattgcagggccatctctcaaac----acctgctccct 376
Query: 181 gtgccatgctgggtggagggagacagggtgctgtgcttcacatcagaaacaagacagggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtgccatgctgggtggagggagacagggtgctgtgcttcacatcagaaacaagacagggt 436
Query: 241 gtattctttctgtactccacgatgtgtgcacaggagggtgaggctggacaagttaggcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtattctttctgtactccacgatgtgtgcacaggagggtgaggctggacaagttaggcag 496
Query: 301 gaagtcagggaggagcaggaggaggactgaggaaaggaagggtgaaggcaacatcccaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gaagtcagggaggagcaggaggaggactgaggaaaggaagggtgaaggcaacatcccaat 556
Query: 361 tggaaaatgggcaaagtaaaaatccttgctcagagatgacctgtgatatgagaaagctaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tggaaaatgggcaaagtaaaaatccttgctcagagatgacctgtgatatgagaaagctaa 616
Query: 421 acccatgaatgctgtactctctctcacacacacaccacacccaaagagagtactcaataa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 acccatgaatgctgtactctctctcacacacacaccacacccaaagagagtactcaataa 676
Query: 481 taagagtttggggaagagttgtagtatgtatttgtaactcc 521
||||||||||||||||||||| ||||||||||| ||||
Sbjct: 677 ---gagtttggggaagagttgtagcatgtatttgtagctcc 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 916
Length adjustment: 10
Effective length of query: 513
Effective length of database: 906
Effective search space: 464778
Effective search space used: 464778
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
