BAC Information

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BAC

Clone NameMSMg01-420A23
Chromosome15 (Build37)
Map Location 71,392,965 - 71,393,114
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383051, 1700010C24Rik
Downstream geneLOC100040847, Col22a1, Kcnk9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420A23.T7 (MSMg01no420_a23.b1)MSMg01-420A23.TJ (MSMg01no420_a23.g1)
ACCAG515014AG515015
length810821
length of high quality
(start - end)
166 (69 - 234)112 (70 - 181)
definitionCHROMAT_FILE: MSMg01no420_a23.b1 PHD_FILE: MSMg01no420_a23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:46 2005CHROMAT_FILE: MSMg01no420_a23.g1 PHD_FILE: MSMg01no420_a23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTGCGGCGCTAAAGGAAGACTACAGTCCGAAGCTGCGCNGGAANCNG
CTCTTTTTCCAAATAAGGTGGAGCTTTGTCACAACCTGGAACCTGTACTG
TCTATTGTGGGTGGAGGGGCTGCTGTTTTTCAGAAAATCTAAGGATTTTC
TGTTTTGTTATGTTCTTCTCATTTGGTGTGTGTGTATGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGAGATCCTTTTTTTT
TTATTATTTTTTTCTTTTTATTTTCAAATTTCTACATTTTGCACTCAATT
ACCCATCCTTTTTTTTTTTTTTTAAACAGGACGATATTATTGTTTTATTT
TTATTTTTTCTTCTTTTTGGTTTATGCTTGTAACATCTATGTACTATTCC
TTATCTATTATCCACTCCCTATGTCATTTAATTTTTTTACATTTATTTAT
TTTATTTATAACCATATTACTTTCATTACTTTGTTTTTAACTATACATAT
ATTACTCTCACTTTCTTTTTTTGTCATATATAATTACTTTTACATCTAAC
ATATAACTTAGCATTGATATATAATATAATAAACGTATTACGATATTAGT
ATCCCTTAATATTACTTTTTTATGTACTCGCTTTTTTGCTCTCTTTTCTT
GTTTTTTAATGCGCTTAGCCACCCATTTACTGTGAATGTCAGATGATTTT
CATCCGTACTATTGTTAACCCTTATATTTTCTATCCGCCGCTGTTATTTC
ACTGTTATCTTTTGATTTACGTTTTCCGGCAGCTGTTCAGTGCTGCAGAC
TGTCATCATG
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAACTTAGGTCAGGTTCTCTAAAATGGTGTC
TGAACATAAAAGACTTGGCATCTCATCTCCCCCCTTCTCTTGTGTCTAGA
AGTCTAAATCATAGGACCTCCTGAAGCTTTATNGAAAACAAGTAACAGTG
GGGCTATGTTTGTATGGTGTCTCCGGGACATANCNGGTGCGNNTTATAAN
ATGTCGCTACGCGGTGCCGAGNNNNNNGGGGTTCGTGGGGGGGTTTGTCT
NGGGGGGGGCTGGTTTTNNNNNCNNNNNNNNNNNNNNGGCGGCGGGGGGC
CNNNNNNNNNNNNNNNNNNNNNNNNNGGGGNNNNNNNNNAACAAAAAANN
NNNNNNNNNAGNNNAATATAAAANNAATTTTTTNTNNTAAATAAAAAAAA
AAAAAGAGGGNNNNTTTNNNNNNNGNNNNNATAAAGAAAAAAAAANNNNN
NNNNNNNNNNNNNNNNTTTTTTTAAAAAACCCCCCCTTTATTTTTTTTTT
TGGGGGGCAACCACAACAGGGGGGGAAAAATTTTTTTTGTGGGAGAGAAA
TTTTTTTTTTGTTGTGGGTGGCGGTGTTTATTGGCGAATATCCNCNTGCG
NGNGGGGGGTGGTTGNGGGGTGGGGTNGGNGGGGNNNANGGCGCTTTGTT
TCNCCNTTTNTCCTCTTATATAATTACCAACATTTTTATCAATCCCTNCA
NCTTTATAAACCCTTCCTAACCTCTACCATATATAAACCCCATAAAATAA
TCCATTGTTTTTTTATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_a23.b1 MSMg01no420_a23.b1 CHROMAT_FILE:
MSMg01no420_a23.b1 PHD_FILE: MSMg01no420_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:46 2005
         (166 letters)



>mm_chr15_71392814_71393379
          Length = 566

 Score =  267 bits (138), Expect = 3e-76
 Identities = 147/150 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggagctttgtcacaacctggaacctgtactgtctattgtgggtggaggggctgctgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tggagctttgtcacaacctggaacctgtactgtctattgtgggtggaggggctgctgttt 242

                                                                       
Query: 61  ttcagaaaatctaaggattttctgttttgttatgttcttctcatttggtgtgtgtgtatg 120
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||
Sbjct: 241 ttcagaaaatctaaggattttctgttttgttatgttcttcttgtttggtgtgtgtgtgtg 182

                                         
Query: 121 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 150
           ||||||||||||||||||||||||||||||
Sbjct: 181 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 152


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)