BAC Information

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BAC

Clone NameMSMg01-422I05
Chromosome15 (Build37)
Map Location 95,213,032 - 95,379,204
singlet/doubletdoublet
Overlap geneNell2
Upstream geneAdamts20, Pus7l, Irak4, Twf1, Tmem117, LOC100043315
Downstream geneDbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329, D030018L15Rik, LOC100043335, EG667869, LOC667874, LOC667894, Arid2, Sfrs2ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422I05.T7 (MSMg01no422_i05.b1)MSMg01-422I05.TJ (MSMg01no422_i05.g1)
ACCAG516884AG516885
length740791
length of high quality
(start - end)
182 (64 - 245)159 (64 - 222)
definitionCHROMAT_FILE: MSMg01no422_i05.b1 PHD_FILE: MSMg01no422_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:58 2005CHROMAT_FILE: MSMg01no422_i05.g1 PHD_FILE: MSMg01no422_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,379,023 - 95,379,204)(95,213,032 - 95,213,190)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAATCCGCGGAATTCAAAA
GTGGGTTTCATTGAAAAAGTCAATCTGAAATACTAGAAACAAACAAACAA
ATCATGGAATCAAACGAACGTGTCCACAGAAGGCCTCAGCATTAGAATGA
CAGGGGAGATGGCTGAATGTAAGGGTGCGGTGGCAATCTAGAATGAATTG
GAAGATCCAAACCACTGAGTTATTAATAAGAGAGTATGGCCAGAATATAT
GAGCTATGTGGGTCACCCTGAAAATCCCAAGGATACAAATCATGGGCAAA
GAAAAATAATCCTGTGTCATGCATTATATAAAACATTCCCAGTAGAATTA
CCAAAGAACCCTCTCTCTCCACAACTATATAAGACAGTGCTTGAAGAAAA
CTGAACGGCGATCAGGGGCCCACCCGGTATGACGGGGAGAAGTCAGAGCA
TCTTGACTTGCAGATGACGATGATGGTATACCTGAGTGAACCTAAGACGG
TCTTTTGGTATCTCCTACAACTGATAACCGCTTTTCAGGAATAGTACATG
CTTTCTAATCCACTATGGCGAACCCTTAGGTCTTCCTATACTCGATTGTC
CGGGTTAATTATTTTCTTTTCTTAACCACTCTTAAACGATGTATTTCACT
TCGGCGATAACTCCTTTCTTTTTTTATTAAAGATCTTTTTTATATTAACC
CTTTAAAACCTTTCGCCAACGAAATCGGAACCAATTTTTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTCAGCNAATCACTGCCTCCTGAGGCAGCCCACCCACCACATCTGTGA
AGAGGTTTGCTGTTTGCTTACAATGAACTAAAGTGCTAGGACTAGGGTAC
TTGTGGTTCTACGCTTATCAAGTCAGAGGCAACACAAAAGAAGTGGTGCA
CATCTATGCAGCCTGTCTTTTCTGGCAGNCCCGGCGTATAGCCCAAAGCT
ATGTATTGAACAGTCGTAGCTGATGCAAGCAGAACCTGGACAGTCTGNCG
TTTTGCGTTGTGCGAAACAGGCAACTTTTGTTGTTTTTTTTCGCCCTAGT
GAAAATTGAAAGGCTACCTCGATCCATAAAGTGTCACCGCGCCCCCTCCC
CTTTCCTTTTTCTTTGTCACTCCTTTTGCTCCCCTTATCGTGTATTTTTT
TACTGCGTGGGTTTTTTCTTTTTTTTTCCACCTCTACAACTAAAAATTGG
GGGACTTTCTCCTTATTTTTTTCGCTTCTTTCCCAACACAAATNTTTTAT
TTTTTCCCTCTTTTTTCTCTACTATTCGTTTCTTTCACTGTGCTCTCCTT
CCCATTTCTCTCTTATATGTCCTCTACTTTTTTTCTCTCCGTCTACCACC
CTCTCCNCTCTTTTTCTCTCTTCCCTTTTAAGCTCCTTTCTTTTGTNCTT
TCNNNNNCNNNNNNTCCNNNNNNTCCCCTATTTTTTTTATTTCNNTTCTC
TATCAATTTNCTCCNNNNCNCCTCCCCAATCACTCTCTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_i05.b1 MSMg01no422_i05.b1 CHROMAT_FILE:
MSMg01no422_i05.b1 PHD_FILE: MSMg01no422_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:58 2005
         (182 letters)



>mm_chr15_95378823_95379404
          Length = 582

 Score =  329 bits (170), Expect = 7e-95
 Identities = 179/182 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaagtcaatctgaaatactagaaacaaacaaacaaatcatggaatcaaacgaacgtgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 382 aaaaagtcaatctgaaatactagaaacaaacaaacaaatcatggaatcaaacgaacgtct 323

                                                                       
Query: 61  ccacagaaggcctcagcattagaatgacaggggagatggctgaatgtaagggtgcggtgg 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ccacagaaggcctcggcattagaatgacaggggagatggctgaatgtaagggtgcggtgg 263

                                                                       
Query: 121 caatctagaatgaattggaagatccaaaccactgagttattaataagagagtatggccag 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 262 caatctagaatgaattggaagatccaaaccactgatttattaataagagagtatggccag 203

             
Query: 181 aa 182
           ||
Sbjct: 202 aa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space:    99876
Effective search space used:    99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no422_i05.g1 MSMg01no422_i05.g1 CHROMAT_FILE:
MSMg01no422_i05.g1 PHD_FILE: MSMg01no422_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:58 2005
         (159 letters)



>mm_chr15_95212832_95213390
          Length = 559

 Score =  284 bits (147), Expect = 1e-81
 Identities = 156/159 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgcctcctgaggcagcccacccaccacatctgtgaagaggtttgctgtttgcttacaa 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgactcctgaggcagcccacccaccacatctgtgaagaggtttgctgtttgcttacaa 260

                                                                       
Query: 61  tgaactaaagtgctaggactagggtacttgtggttctacgcttatcaagtcagaggcaac 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 tgaactaaagtgctaggactagggtacttgtggttctatgcttatcaagtcagaggcaac 320

                                                  
Query: 121 acaaaagaagtggtgcacatctatgcagcctgtcttttc 159
           |||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 acaaaagaagtggtacacatctatgcagcctgtcttttc 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)