BAC Information

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BAC

Clone NameMSMg01-425D13
Chromosome15 (Build37)
Map Location 20,995,970 - 20,996,492
singlet/doubletsinglet
Overlap genenone
Upstream geneAcot10, LOC100040302
Downstream geneCdh12, LOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425D13.T7 (MSMg01no425_d13.b1)MSMg01-425D13.TJ (MSMg01no425_d13.g1)
ACCAG518955AG518956
length743759
length of high quality
(start - end)
608 (35 - 642)524 (65 - 588)
definitionCHROMAT_FILE: MSMg01no425_d13.b1 PHD_FILE: MSMg01no425_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:23 2005CHROMAT_FILE: MSMg01no425_d13.g1 PHD_FILE: MSMg01no425_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTT
CAGCTCTGAGCCCCATCTTTTAAGGGGGTTATTTGGTTTTCTGGAGTCCA
CCCTCTTGAGTTCTTTATATATATTTGATATTAGTCCCCTATCTGATTTA
AGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATT
GACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGAGGTCCCATT
TGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAAT
TTTTTCCCTGTGTCCATATCTTTGAGACTTTTCCCCACTTTCTCCTCTAT
AAGTTTCAGTGTCTCTAGTTTTATGTGAAGTTCCTTGATCCACTTAGATT
TGACCTTAGTACAAGGAGAGAGGAATGGGTCGATTCGCATTCTTCTACAT
GGTAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGCCTTTCTT
CCACTGGGTGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGT
GTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTG
TCACTATACCAGTATCATGCAGTTTTTATAACAATTGCTCTGTAGTAAAG
CTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTTTTTTATCCTAGAGAA
GAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGATGAATTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATAGAATAGCTCTGAACGTCAGAGCCAGAGGGCTTT
TCCTCAGACCAATGTGAGTTACCTGTCACAGTAGTAGCACGCATCATGGT
TTGCCACAGTTATCCTTAGAGTGTATAAGCTCACAGGAGAGAGGGAGAGC
AAAGTAGAATGGCCATGTGAAAGCTTGATTCAAGGCAGCTATGTGGAATG
AGGAGATAAGGCAAGAGAAAAGTGGACTCCAGAAAGACAGTAATGAAAGG
ACAAGTTGGAAGAGAAGAACTTTGCATATATGAGGTTTATGAAGCCAGAT
GTGGAACCTTAATTCAAATTTTTGAGAATAACATTTCTATATATCCAAGA
GCCTTAAGGAAATGTGAAACAAAATGTTGGTTAAATTTTTGGTATATCAT
AAAATATAATTATAACTCTTGAATAGAATTATAGAGAAATATTTCCCCAA
GGCATGACAAGTATGCATGTAAAACTAAAAATATTTCATTCATTATTGAC
ATCTTACATAAAAGCTTGGAAATTAATAGGAACTATGNAAACTGCCTTTG
CCCCTCCTCTTACTGGGAAAGTATTCTTTTCATCCATTGCATTTTCATGA
NCTTTTTTTTTTTTACATTGACTGTTTAATTGAACCTACAATATTTCTCA
ATTTCTGTATCATCCTATTAAAGGTAGACTTATTGTTAGGGTACTGAAAA
AATGACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_d13.g1 MSMg01no425_d13.g1 CHROMAT_FILE:
MSMg01no425_d13.g1 PHD_FILE: MSMg01no425_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:23 2005
         (524 letters)



>mm_chr15_20995770_20996693
          Length = 924

 Score =  996 bits (515), Expect = 0.0
 Identities = 521/523 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagaatagctctgaacgtcagagccagagggcttttcctcagaccaatgtgagttacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 atagaatagctctgaacgtcagagccagagggcttttcctcagaccaatgtgagttacct 664

                                                                       
Query: 61  gtcacagtagtagcacgcatcatggtttgccacagttatccttagagtgtataagctcac 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 663 gtcacagtagtagcacgcatcatggtttgccacagttatccttagaatgtataagctcac 604

                                                                       
Query: 121 aggagagagggagagcaaagtagaatggccatgtgaaagcttgattcaaggcagctatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aggagagagggagagcaaagtagaatggccatgtgaaagcttgattcaaggcagctatgt 544

                                                                       
Query: 181 ggaatgaggagataaggcaagagaaaagtggactccagaaagacagtaatgaaaggacaa 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ggaatgaggagataaagcaagagaaaagtggactccagaaagacagtaatgaaaggacaa 484

                                                                       
Query: 241 gttggaagagaagaactttgcatatatgaggtttatgaagccagatgtggaaccttaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gttggaagagaagaactttgcatatatgaggtttatgaagccagatgtggaaccttaatt 424

                                                                       
Query: 301 caaatttttgagaataacatttctatatatccaagagccttaaggaaatgtgaaacaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 caaatttttgagaataacatttctatatatccaagagccttaaggaaatgtgaaacaaaa 364

                                                                       
Query: 361 tgttggttaaatttttggtatatcataaaatataattataactcttgaatagaattatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tgttggttaaatttttggtatatcataaaatataattataactcttgaatagaattatag 304

                                                                       
Query: 421 agaaatatttccccaaggcatgacaagtatgcatgtaaaactaaaaatatttcattcatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 agaaatatttccccaaggcatgacaagtatgcatgtaaaactaaaaatatttcattcatt 244

                                                      
Query: 481 attgacatcttacataaaagcttggaaattaataggaactatg 523
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 attgacatcttacataaaagcttggaaattaataggaactatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)