Query= MSMg01no426_a13.b1 MSMg01no426_a13.b1 CHROMAT_FILE:
MSMg01no426_a13.b1 PHD_FILE: MSMg01no426_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:25 2005
(473 letters)
>mm_chr15_90730968_90731845
Length = 878
Score = 770 bits (398), Expect = 0.0
Identities = 453/474 (95%), Gaps = 5/474 (1%)
Strand = Plus / Plus
Query: 5 gaattctcttctctgtctctttgttgtctcgagttttaaatcactgtgctcagttttact 64
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttctctgtatatttgttgtctcgagttttaaatcactgtgctcagttttact 264
Query: 65 tgatgtttaaagagtcagtgaacttcaggataagcatcgaattatcctgaccttccacaa 124
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 265 tgatgtttaaagagtcagtgaacttcaagataagcatcgaattatcctgaccttcgacaa 324
Query: 125 gctaaggacattcctaagacatgtaaaagtcaaggggagactgctgcttgttcgaatttc 184
|||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||
Sbjct: 325 actaaggacattcctaagacatgtaaaagtcaaggagagactgctgcctgtttgaatttt 384
Query: 185 atggaatgtttatttccacat-----gaggagactctaaggtactctggtcatctttcaa 239
||||||||||||||||||||| ||||||| ||||||||| |||| |||||||||||
Sbjct: 385 atggaatgtttatttccacatattcagaggagaatctaaggtattctgctcatctttcaa 444
Query: 240 aattgtgtgatgcagtttatcttgccagaaataaataaataaggaataataacacctgga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattgtgtgatgcagtttatcttgccagaaataaataaataaggaataataacacctgga 504
Query: 300 ggctaattttgctactattaaacgcctaagaaagctaacacataggcacacagcatctga 359
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggctaattttgctgctattaaatgcctaagaaagctaacacataggcacacagcatctga 564
Query: 360 cgcctacacttccttccatgaagggaatgttgacacactgagggcggagcattttattcc 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cgcttacacttccttccatgaagggaatgttgacacactgagggcggagcattttattcc 624
Query: 420 tagagtggatataaacaactcagagaaagactgtgtcttacatctgtctctgca 473
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 625 tagagtggatataaacaactcagagaaagactgtgtcttacgtctgtctctgca 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 878
Length adjustment: 10
Effective length of query: 463
Effective length of database: 868
Effective search space: 401884
Effective search space used: 401884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no426_a13.g1 MSMg01no426_a13.g1 CHROMAT_FILE:
MSMg01no426_a13.g1 PHD_FILE: MSMg01no426_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:25 2005
(536 letters)
>mm_chr15_90821964_90822900
Length = 937
Score = 745 bits (385), Expect = 0.0
Identities = 438/465 (94%), Gaps = 17/465 (3%)
Strand = Plus / Minus
Query: 85 ctggttgtctcgtgactgaaagctgatatgattagtgtggggaatgtgctcctcgtggag 144
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 937 ctggttgtctcgtgactgaaagctgatatgattagtgtggggaatgcgttcctcgtggag 878
Query: 145 tccagcccgttcacggcaggaaagtatagctatagaaatattaatgatttaccttttata 204
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 877 tccagcccgttcacggcaggaaagtatagctatagagatattaatgatttaccttttata 818
Query: 205 aagttagatattgaacacatatcatgtc------------atatatatatatatatatat 252
| ||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 817 acgttggatattgaacacatatcatgtcatatatatatatatatatatatatatatatat 758
Query: 253 atatatatatatatttctaaagtcagtattacttgtgtagtgaatccttattcagggaaa 312
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 757 atatatatatatatttctaa----agtattacttgtgtagtgaatccttgctcagggaaa 702
Query: 313 tgacactaatattttccttgtggctatga-aagtattagccacatagaccatttgtatta 371
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 701 tgacactaatattttccttgtggctatgagaagtattagccacatagaccatttgtatta 642
Query: 372 taacaggaaactttctaggagctggggacttgctaaacgtttgatttaaattgagaaaaa 431
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tagcaggaaactttcaaggagctggggacttgctaaacgtttgatttaaattgagaaaaa 582
Query: 432 ctcataatacgaatgagtagttccctgaagatgtaacctgagctccaggcatggtcagac 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ctcataatacgaatgagtagttccctgaagatgtaacctgagctccaggcatggtcagac 522
Query: 492 ttattcagtctttaaacatttctgttttaagggaaaatctctgga 536
||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ttagtcagtctttaaacatttctgttttaagggaaaatctctgga 477
Score = 66.5 bits (34), Expect = 5e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 233 atatatatatatatatatatatatatatatatat 266
||||||||||||||||||||||||||||||||||
Sbjct: 744 atatatatatatatatatatatatatatatatat 777
Score = 66.5 bits (34), Expect = 5e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 233 atatatatatatatatatatatatatatatatat 266
||||||||||||||||||||||||||||||||||
Sbjct: 746 atatatatatatatatatatatatatatatatat 779
Score = 66.5 bits (34), Expect = 5e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 233 atatatatatatatatatatatatatatatatat 266
||||||||||||||||||||||||||||||||||
Sbjct: 748 atatatatatatatatatatatatatatatatat 781
Score = 66.5 bits (34), Expect = 5e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 233 atatatatatatatatatatatatatatatatat 266
||||||||||||||||||||||||||||||||||
Sbjct: 750 atatatatatatatatatatatatatatatatat 783
Score = 66.5 bits (34), Expect = 5e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 233 atatatatatatatatatatatatatatatatat 266
||||||||||||||||||||||||||||||||||
Sbjct: 752 atatatatatatatatatatatatatatatatat 785
Score = 66.5 bits (34), Expect = 5e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 233 atatatatatatatatatatatatatatatatat 266
||||||||||||||||||||||||||||||||||
Sbjct: 754 atatatatatatatatatatatatatatatatat 787
Score = 66.5 bits (34), Expect = 5e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 233 atatatatatatatatatatatatatatatatat 266
||||||||||||||||||||||||||||||||||
Sbjct: 756 atatatatatatatatatatatatatatatatat 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 10
Length of query: 536
Length of database: 937
Length adjustment: 10
Effective length of query: 526
Effective length of database: 927
Effective search space: 487602
Effective search space used: 487602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
