BAC Information

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BAC

Clone NameMSMg01-428G03
Chromosome15 (Build37)
Map Location 23,807,468 - 23,807,708
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh18, LOC624863
Downstream geneLOC666989, LOC666999, LOC100040492, LOC100040499
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428G03.T7 (MSMg01no428_g03.b1)MSMg01-428G03.TJ (MSMg01no428_g03.g1)
ACCAG521361AG521362
length751770
length of high quality
(start - end)
274 (50 - 323)241 (77 - 317)
definitionCHROMAT_FILE: MSMg01no428_g03.b1 PHD_FILE: MSMg01no428_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:33 2005CHROMAT_FILE: MSMg01no428_g03.g1 PHD_FILE: MSMg01no428_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCG
CGGAATTCTTTTTGTTTCGTTGGATTTTTTCGAGACAGGGAATCTCTGTA
TAGCTCTGGTTGTCCTGTGCTAGGATTAAAGGCATGTGCCTCCATGCCCA
ACTACACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCT
TGTTCTACAGAGTTAGTTCTAGGACAGCCAGAGCTATAGAGAGAAACCTT
GTCTTGAAAAACCAAAATAAATAAATAAATAAATAAATAAATAAATAAAT
AAATAAATAAATAAATAAATATTTTTTAAGGATTCTTAACAGACTTACAT
TACTGGGTCATTTCTTGAACTATACCTGTAAATGAACCACAAGCAAATGT
CACAAAATCATGAAGTCCATATTTCCTAAAGCACTGATAATTTACCATGT
TCTCTATAAAGATAAACATATATTGCTTACAGTAATTTATGCATGTGTGT
AAACAATAATGCTTGAACTGTATTTTTATTAACTTTTAATGATTTTGTGA
CATATATAGCATAAGATATAGCTTGATAATCTCTACCTCTATATCCCTAT
TTTCAACTTTCCTCCACTCTATTTTGTCTCTCGTCTTACCTCTTGTCTCC
TTCCGTTTTTTGCCCCTCCTATTCCCCGTTTTTCCTTCCTCTCTTTTGGC
TTTCTCCATTTTCGCCTACCTTCCTTCTGATTTTCCCCCCACTTTTTTTT
C
TTCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGGAGAAAGAATCAGAGAAAAA
TGTGGGTCTGAGGGGCACTACAAGTACTGGGATCACACAATCAACTGACT
AGGACTCATGAGGCCATGCAGAATCGTTACATTACATTCTTAGACAATAG
AGGCTGCAATAGAGACAATCCTAGGGAATTCTCTACAGATTTATATTACA
AATACTGGAAAATGCATCTGCAAGTTGGTTACGTGTCTTTAATTCTGAAG
TAGCAACATTTAAGAACCTGATTTATTTGGAAGCCATAGGTTGCCTTCAA
AGTCTAGGTCAGAGTATCGCGTATCTAGATCATGTATATAGATATAGAAT
TATATAATATTTGTGAAGGAGTTAATATAAAATATTCTTCAATGACATCT
CTTGAAACCTACAGATTAATCTGCAGGTGCTTTTATAAATATTTTTATTT
CCTTACTATATCCGACCACACATCACACGCTGTATGTCTGACCCATATAC
TTATTTCTGTAAATACAGACGCGCCATGACTTTGATACTGCCCCTCTTCG
TTATTTCCTTTTACATTCCTTTTTTTATTTATCCCCACCTTTTCTTTCCC
TTATTCTCCACGCTCTTATTTTATATCTGTTTTTTATTCTTCCAACGAAC
ACCTCTAACCTTCTATTCGCCCTATTTTATTTGAAAACGCGTTTTTCCTC
CCTTTGTTGCTTCCTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_g03.g1 MSMg01no428_g03.g1 CHROMAT_FILE:
MSMg01no428_g03.g1 PHD_FILE: MSMg01no428_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:33 2005
         (241 letters)



>mm_chr15_23807268_23807908
          Length = 641

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggagaaagaatcagagaaaaatgtgggtctgaggggcactacaagtactgggatcac 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 catggagaaagaatcagagaaaaatgtgggtctgaggggtactacaagtactgggatcac 260

                                                                       
Query: 61  acaatcaactgactaggactcatgaggccatgcagaatcgttacattacattcttagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaatcaactgactaggactcatgaggccatgcagaatcgttacattacattcttagaca 320

                                                                       
Query: 121 atagaggctgcaatagagacaatcctagggaattctctacagatttatattacaaatact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 atagaggctgcaatagagacaatcctagggaattctctacagatttatattacaaataca 380

                                                                       
Query: 181 ggaaaatgcatctgcaagttggttacgtgtctttaattctgaagtagcaacatttaagaa 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaaatgcagctgcaagttggttacgtgtctttaattctgaagtagcaacatttaagaa 440

            
Query: 241 c 241
           |
Sbjct: 441 c 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)