BAC Information

Click to search

BAC

Clone NameMSMg01-429F03
Chromosome15 (Build37)
Map Location 24,976,546 - 24,977,031
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666989, LOC666999, LOC100040492, LOC100040499, LOC100040529
Downstream gene9230109A22Rik, 4930445E18Rik, Basp1, EG432939, LOC100040583, Myo10, LOC100040602, Ppia-ps15_175.1, 1810015C04Rik, Zfp622
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429F03.T7 (MSMg01no429_f03.b1)MSMg01-429F03.TJ (MSMg01no429_f03.g1)
ACCAG522077AG522078
length753720
length of high quality
(start - end)
442 (36 - 477)480 (76 - 555)
definitionCHROMAT_FILE: MSMg01no429_f03.b1 PHD_FILE: MSMg01no429_f03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:46 2005CHROMAT_FILE: MSMg01no429_f03.g1 PHD_FILE: MSMg01no429_f03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCATG
TACATTGGTCTTCCTTGTATAAACCTCGACCCCGAATTTAAAGGTATTGG
TTAATTATAAGTGGCTACAGAATTACTTAGGATAGAGGTAGGCAGGGATT
TAGCTATACACACACACACACACACACACACACACACACACACACACACA
CACACACACACACACACGGGCAGGGAGGATAAAGAAGATGGGAGAATAGG
TCTTCCTTAGACAGGATGGACCAGGAGCATGTGACCAAGAGAGGTGTGCC
CTGAGGACACAGTCCAGGTGAGACTCAGACTGCAAGTAATTGGGGAACAC
AGCTGGGAAACAGCCAGGGTAGTGTGGAAAATAGATAATCGCCTAGTAAT
TGTGCCCAAGCTGATTAAGTAAATCAATAGGACTCAGTCTCAATTATTGG
GGGAACTGGTCATAATAAGAACTAATAGAATTATTTAATATCCCACATCA
ACAGTAACCTCTTCGCACCTTTGATTCTCCTGCTACCCTGTCTGCTTCCT
CTTCAGCGATCCCTTAGGTGTACAGCTGCAAACCCTTCCTCAAGCTTTGG
TTTTTTTCAGAGGCGCCTTGGGCAGCTAGAGAGACCCGACCCCTTGGGGG
CTGAAGGCGTCCAGAAACCCTTACCTTTCCCCTCTAGGGAAAAATTTGGC
CGACCACCCAACTCCGGAGTTATTTGGCCCCCAACAATTCCTCTGTCCCA
ACT
CATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGACCAGACAGTGTTCCTGTCTGA
TAAGCACATTTTGCATAGAAACCTGGACAGGTTTTACAAAGCACTGGCTA
TTAGGCACCCTTCTACAGCAGACATATCAGGGACACCACAAGAAGCCCAG
CCCTTGCCCTTTGGCAGTAAGAAGAGCTGAGTCCATGTGCCAGACACTGG
CTCATCCTTACTGACAAGTCACCATATGTTCTGTTCAAGTGACTCTAAGC
GTCTGGGGTAGAAGATCAGAGAGTAGGTGAACCTGCCATGGTGAAACTGA
ACCAGCCTATAGGCCCTATAGGCTGCAGAATGCAAGGCACCAAAAATTAT
AGAAGACATCAACGAACTAGTTTATGAGTAAAACACTTTCCATTTAAATT
GGAAAATATCAAGATGATTTTAAAATCTTCCATGAGTAACAATAATGGCA
TCATTATTTCATTAAGGTAAAATAATTTACTATGAATCATTATGTTTTTG
AAAACAATACAAATTTCAAAAGTCCATTTTTTTCAGCTTTTAATATTCTC
TACTTTATTTAAATGACAGCGTCATTCTTGCTCATGATTATGCACTCCAC
ATCATGTGATCTATGATTTTAGCTGACGGACCAAAGGACATAAGGATCTT
AAGGAAATAAAGTTCACCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_f03.g1 MSMg01no429_f03.g1 CHROMAT_FILE:
MSMg01no429_f03.g1 PHD_FILE: MSMg01no429_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:46 2005
         (480 letters)



>mm_chr15_24976352_24977231
          Length = 880

 Score =  866 bits (448), Expect = 0.0
 Identities = 474/486 (97%), Gaps = 6/486 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaccagacagtgttcctgtctgataagcacattttgcatagaaacctggacaggtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 cagaccagacagtgttcctgtctgataagcacattttgcatagaaacctggacaggtttt 254

                                                                       
Query: 61  acaaagcactggctattaggcacccttctacagcagacatatcagggacaccacaagaag 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 acgaagcactggctattaggcacccttctacagcagacatatcagggacaccacaagaag 314

                                                                       
Query: 121 cccagcccttgccctttggcagtaagaagagctgagtccatgtgccagacactggctcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cccagcccttgccctttggcagtaagaagagctgagtccatgtgccagacactggctcat 374

                                                                       
Query: 181 ccttactgacaagtcaccatatgttctgttcaagtgactctaagcgtctggggtagaaga 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ccttactgacgagtcaccatatgttctgttcaagtgactctaagcgtctggggtagaaga 434

                                                                       
Query: 241 tcagagagtaggtgaacctgccatggtgaaactgaaccagcctataggccctataggctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tcagagagtaggtgaacctgccatggtgaaactgaaccagcctataggccctataggctg 494

                                                                       
Query: 301 cagaatgcaaggcaccaaaaattatagaagacatcaacgaactagtttatgagtaaaaca 360
           |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 495 cagaatgcaaggtaccaaaaattatagaagacatcaaagaactagtttatgagtaaaaca 554

                                                                       
Query: 361 ctttccatttaaatt------ggaaaatatcaagatgattttaaaatcttccatgagtaa 414
           |||||||||||||||      |||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ctttccatttaaatttaaattggaaaatatcaagatgattttaaaatcttccatgagtaa 614

                                                                       
Query: 415 caataatggcatcattatttcattaaggtaaaataatttactatgaatcattatgttttt 474
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 615 caataatggcatcattatttcattaaagtaaaataatttactatgaatcattatgttttt 674

                 
Query: 475 gaaaac 480
            |||||
Sbjct: 675 aaaaac 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)