BAC Information

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BAC

Clone NameMSMg01-429H07
Chromosome15 (Build37)
Map Location 56,555,770 - 56,556,145
singlet/doubletsinglet
Overlap genenone
Upstream geneSntb1, LOC665348, LOC100039908, Hba-ps3, Has2, EG594843
Downstream geneLOC435442, LOC100040067, LOC100039984, BC026439, Zhx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429H07.T7 (MSMg01no429_h07.b1)MSMg01-429H07.TJ (MSMg01no429_h07.g1)
ACCAG522180AG522181
length747739
length of high quality
(start - end)
532 (39 - 570)366 (74 - 439)
definitionCHROMAT_FILE: MSMg01no429_h07.b1 PHD_FILE: MSMg01no429_h07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:57 2005CHROMAT_FILE: MSMg01no429_h07.g1 PHD_FILE: MSMg01no429_h07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
AGCTAACCTGTGAGGCCGGGGTTCCCACTTTAAAATTCAAAAATAGCACA
GAAGAGAAGGAGATTTGATAATTTAAAACCCAAAGGCTAGAAATTGGGGA
AAACAGATGTCAGCAAAAACGAAAAAATCAGCTTTCTCATTACTGTGTTT
TATAAGCAGGTAATAGCCGGGCATGGTGGCACATGCCTTTAATCCCAGCA
CTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCT
ACAAAGTGAGTTCCAGGACAGCCAGGGCCATACAGAGAAACCCTGTCTCG
AAAAAACCAAAAAATAAAAAATAAAAAAAAAAATAAAAATAAATAAAAAT
ATAAGCAGGTAATGTACTGTCAGTATATAATCTGAATGTTCACTTTGTAT
CTCACAGCACACACATCAAACCTCTTTCAGAATGAATCAGGAAGGACCAC
GATGGATCAATGAATTGATAAAACTCAAGGTGGTAAATTAGTATTATAAA
ATAGTCACAGGATGAGACTAAGGCCAGAACAATATAATAGTGAAAGAATG
GGTAGGCACATGTCAGACTGACAACTACCTCGTGTAGGTTCAGATTTTGT
CCTGGAGATAATGGCCTTATATGATTTCCCTTGAAACCAGCTCTGTCCCA
TTTGGCTCAAGTTCTGTCTCAGCAAAGGTCCCCGATGACAAGGCAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCCGAGGAATACCGAAAGGCTGAG
AAGCACCTGAGAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACA
CTCCTCTATTGTTGGTGGGATTGCAAGCTTGTACAACCACTTTGGAAATT
AGTCTGGCAGTTCCTCATATTTTTGGACATAGTACTACCAGAGGATCCTG
CAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGGCTTATTTATAGTAGCCAGAAG
CTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACTACAAATGT
GGCACATTTACACCATGGAATACTACCCCGCTATTATAAAGAACGAATTT
ATGAAACTCCCACGCCAATGGTTGGACCCGGAGGGCCTCCCCCCTGAGTG
AGGCTATACCATTTCTCAAGATCTCCCTTGTAATCGCCCCCCCCGATAAG
TGGTATATTATCCCCTAACTCTTACATAGTTGACCCCTCACGCGTCACTT
CGTCCTAACCTTTGATCTTGCCCAACAACTTTTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_h07.b1 MSMg01no429_h07.b1 CHROMAT_FILE:
MSMg01no429_h07.b1 PHD_FILE: MSMg01no429_h07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:57 2005
         (532 letters)



>mm_chr15_56555770_56556701
          Length = 932

 Score =  685 bits (354), Expect = 0.0
 Identities = 370/376 (98%), Gaps = 3/376 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaagctaacctgtgaggccggggttcccactttaaaattcaaaaatagcacaga 64
           |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 376 gaattccaagctaacctgtgcggccggggttcccgctttaaaattcaaaaatagcacaga 317

                                                                       
Query: 65  agagaaggagatttgataatttaaaacccaaaggctagaaattggggaaaacagatgtca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agagaaggagatttgataatttaaaacccaaaggctagaaattggggaaaacagatgtca 257

                                                                       
Query: 125 gcaaaaacgaaaaaatcagctttctcattactgtgttttataagcaggtaatagccgggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gcaaaaacgaaaaaatcagctttctcattactgtgttttataagcaggtaatagccgggc 197

                                                                       
Query: 185 atggtggcacatgcctttaatcccagcacttgggaggcagaggcaggcggatttctgagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 atggtggcacatgcctttaatcccagcacttgggaggcagaggcaggcggatttctgagt 137

                                                                       
Query: 245 tcgaggccagcctggtctacaaagtgagttccaggacagccagggccatacagagaaacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tcgaggccagcctggtctacaaagtgagttccaggacagccagggccatacagagaaacc 77

                                                                       
Query: 305 ctgtctcgaaaaaa-ccaaaaaataaaaaataaaaa--aaaaaataaaaataaataaaaa 361
           ||||||| |||||| |||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 76  ctgtctcaaaaaaaaccaaaaaataaaaaataaaaataaaaaaataaaaataaataaaaa 17

                           
Query: 362 tataagcaggtaatgt 377
           ||||||||||||||||
Sbjct: 16  tataagcaggtaatgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)