BAC Information

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BAC

Clone NameMSMg01-431N14
Chromosome15 (Build37)
Map Location 98,828,279 - 98,828,674
singlet/doubletsinglet
Overlap genenone
Upstream geneCol2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a
Downstream geneEG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431N14.T7 (MSMg01no431_n14.b1)MSMg01-431N14.TJ (MSMg01no431_n14.g1)
ACCAG524012AG524013
length775761
length of high quality
(start - end)		438 (68 - 505)398 (73 - 470)
definitionCHROMAT_FILE: MSMg01no431_n14.b1 PHD_FILE: MSMg01no431_n14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:21 2005CHROMAT_FILE: MSMg01no431_n14.g1 PHD_FILE: MSMg01no431_n14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCTACA
AGAGTTCCCCAACTTCCAATGTGACAGGCTGACCTGTGACCTGTGAGTAC
CCTGACAGTGGTGACCAGAAAGCTGTGTTGAGTGCACAAAAGAGGAGAAA
TCGGAGAGCAGCCACTTACAAACAGATAAAGAAACTTCATATCTCCACCA
TGGGCTGCAGCAAGGAGTACCAACCTGGTGCCAACTTAAAATAAAAACAA
CTAAAAAAACTGACTCGTGAGGCAAAAAGACTGGTACAGAGAATGTACAA
GATGCTTTCGTCAGATATACTGTTTTTGGCCATTCAGGCCAGCTTCTTAT
AGCTATGAAAGTTTGTGTACCTTACCTATATGCTTATTGTTAGATAATTT
TAAGAGTTAAGATCGCCAATCTTGGGAGGTCTTTTTATATTCATTGTAAT
TCTTGTCAGTTAACTAACTGTGTAGATCCTGATTTAGATAAGGAATCTAC
TGTTATGTTTTTGTAAGAGACCTGCTTATGTTTTGCTGCCTATTANAGTT
AGAAAATGATCCCTTGGTTAAAAATCTGAAAAAGCACACTTTAAAAGGGA
TCTACCCCAGCCCTTATTTCAACAGGTACATACTGCCCATTTTTGTTAAG
GAAAAACAAAAGGAAAATTTCCTTAGCCTTGCCCCAACAACCATTTAATA
GAGTAAAATTTTGTGGGGTCAGAGGGCCTTTAAAAAATAACCTTACCCCA
CACTTGGATATTCTCCCCCCAAAGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXGCCTTGTCTAGAGAGTGTGACCCTGTCT
CAAATAGAAAAATAAGAGAAATGGAAAAGAGCCCAAACTTACTTTCTGAG
GGTTTGATAAAACACATTCTTTGTATCACAGCAAACCAATAAACAATCCT
CATTGTGATGTTAATGCTAATTGTCAGCTTGATAGACAATAAAGATGGGC
ACCCTTGGTGGCATGCCTCTGGAAGATTCTCTCGGTTGCCTTGAGGCCGG
ATCCATTGTGTGTGCAGCGGGGCCCATTCATTCCCTGGTGGATCCTGGAC
TGTGTAACTGGAGAGAGAGGGATTGGGCAGCAGCTTGTATCCATTGCTTT
TCCTGGCTGCGGAGGCAAAGGGACCTCTGTTTTAAGCTGCTGATGTCTGG
ACTTCCCTGATAAGATGGACGGTTGTGCGGGGTCTCTGCACACACAAGCT
GGCAGAGTGTCTGTCTTCGTGAGCCTATAAAAAAGCCTGGTCGTTTCAAA
CTTTATAGAATCCGGACACCGGGAAACTTATTTCTACCTTTTTTTCTACC
CATTATTCCCGGTATAAATTTTCCACCTCTACACATACTCGTGCTATTCT
TCATACTCTTTTAACCTTATCCCCCCTCTCTCTTCATACCCCCCCCCTCT
TTTTCTTTAAATCATGTTTCTTTCATTCACATTCTCACTTTTTTTCCACC
CTTCCCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_n14.g1 MSMg01no431_n14.g1 CHROMAT_FILE:
MSMg01no431_n14.g1 PHD_FILE: MSMg01no431_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:21 2005
         (398 letters)



>mm_chr15_98828079_98828876
          Length = 798

 Score =  731 bits (378), Expect = 0.0
 Identities = 393/398 (98%), Gaps = 2/398 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccttgtctagagagtgtgaccctgtctcaaatagaaaaataagagaaatggaaaagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccttgtctagagagtgtgaccctgtctcaaatagaaaaataagagaaatggaaaagagc 260

                                                                       
Query: 61  ccaaacttactttctgagggtttgataaaacacattctttgtatcacagcaaaccaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaacttactttctgagggtttgataaaacacattctttgtatcacagcaaaccaataa 320

                                                                       
Query: 121 acaatcctcattgtgatgttaatgctaattgtcagcttgatagacaataaagatgggcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 acaatcctcattgtgatgttaatgctaattgtcagcttgatagacaacaaagatgggcac 380

                                                                       
Query: 181 ccttggtggcatgcctctggaagattctctcggttgccttgaggccggatccattgtgtg 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttggtggtatgcctctggaagattctctcggttgccttgaggccggatccattgtgtg 440

                                                                       
Query: 241 tgcagcggggcccattcattccctggtggatcctggactgtgtaactggagagagaggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 441 tgcagcggggcccattcattccctggtggatcctggactgtgtaactggagag-g-ggga 498

                                                                       
Query: 301 ttgggcagcagcttgtatccattgcttttcctggctgcggaggcaaagggacctctgttt 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 499 ttgggcagcagcttgtatccattgcttttcctggctgtggaggcaaagggacctctgttt 558

                                                 
Query: 361 taagctgctgatgtctggacttccctgataagatggac 398
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 559 taagctgctgatgtctggacttccctgataagatggac 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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