BAC Information

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BAC

Clone NameMSMg01-431P11
Chromosome15 (Build37)
Map Location 47,360,994 - 47,361,499
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039438, LOC665130, LOC100039485, LOC100039493
Downstream geneCsmd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431P11.T7 (MSMg01no431_p11.b1)MSMg01-431P11.TJ (MSMg01no431_p11.g1)
ACCAG524101AG524102
length758753
length of high quality
(start - end)		509 (38 - 546)501 (69 - 569)
definitionCHROMAT_FILE: MSMg01no431_p11.b1 PHD_FILE: MSMg01no431_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:30 2005CHROMAT_FILE: MSMg01no431_p11.g1 PHD_FILE: MSMg01no431_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTG
CCTGTATCTCTGTGTAGAACCTCAATAATTCCTTTCTGTGTGTCTGTGCC
ATGCAATACAAGTTCTGTTCCATGTATCTATTCCATACTGCCATCATTCC
ATTCCTGTCTGTGTCTGTCTATGTGTCTGTGGAGAACTGCTATTATTCTG
TTCTGAAAAGAGGCCTAAAAATATGTATTTCATGGTTAGTGCAACTGGGG
CAGAAGTGCTAGATATCCTTAATTACACAGGGCTTGAAGACATTCCAGAC
TTTGAGAGGGAGGATACCTCTAGTGTCTCAATCAGGACTGGTTACAGGCT
CAGGTAGCCATGGCCACTTTTCCTCCTGAAGGAGGGTAGAGGATGAATCT
TTTTGTGTTTATATTTGTTGGTGTTCCTGTTGAATAATTGTCTACTCTTG
CATTTCTTGTTATGGGGCAACATTGACTTTGACAGATTTAGGATTGGACA
AGTACCTTTTACCCTTCCAGAATTATTTCTCAGTTACTTTAAAGATGTTA
GGACCAGAGGACAGAACATTTCAGTAACCAATAGGAAAGAGAAACTAATA
AAGTTCTGTTAGTCTGAATGACCACGATTTAACATCCTCCTTGACCCACA
GAGGTATTTCTTGAACTTTATACTGGTAACGGCCTTGTAAAACTCTCTTT
TTCCACCCAAGTCTATCCCACTGGTTCAGGGATTCTATAAACTGGTTTTT
TAAGGAAN

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTATAGGTTCTTGTATTGATGCTTTTCTCTC
CTAAGTTCTTCCTATTCTGCCTCTTTTTGCTTTGTTTCTTCCTTCTTTTA
TTCATTTTCCCTATTATGATACCTGCTACCTGCAGTAACTCTCTCAAAGT
CTTATCTCATAATCCCTGCAGTCTCTGAAGTTGCTTCATAATGTCTCTTG
CACCCTGATATATGAATGCCATGGTCACAGTGGCCACTTTTGTATTTGGA
TCATAGGATGTATATTGGCAAAATGCCTCCATAAGCTGCTCAAGGAAGCC
TGAGGATGACTCATCTGGGCCCTGCTGCACCTTCTTTACCTTGGTGGTCA
AATTGGTGGGTTGCTTCACAGCGCCCTTGAGACCTGCCAAGAGAACTTGG
TGGTAGACCTTTAGGTGTTCCTTCCTTACCTATAGCTGTTTTAAAATCCC
AGTCTGGGCTAATCAAAGGGAACCCACTATCGATGACAGCATGGTCAATT
GAGAATGCCCCTGTATCCGATGGGACATTTTTCCTGGCTTCCTGCATGAT
TCTCTTCCTCTCTTTCAGTGTGAAAACACTGTCATGAGTTGCTGGAAATC
TCCCAGTGGGCTGGAGAGGAACCAAAGAATCTCAAAAAGGTATCCACCCT
TTAAATTGTCCTAAAAAGGAAGGTGGAAACCCTTCTCTTTTACGGTTCCC
CAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_p11.b1 MSMg01no431_p11.b1 CHROMAT_FILE:
MSMg01no431_p11.b1 PHD_FILE: MSMg01no431_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:30 2005
         (509 letters)



>mm_chr15_47360791_47361699
          Length = 909

 Score =  955 bits (494), Expect = 0.0
 Identities = 503/506 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctgcctgtatctctgtgtagaacctcaataattcctttctgtgtgtctgtgcc 63
           ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 709 ggaattcctgcctgtatgtctgtgtagaaccgcaataattcctttctgtgtgtctgtgcc 650

                                                                       
Query: 64  atgcaatacaagttctgttccatgtatctattccatactgccatcattccattcctgtct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 atgcaatacaagttctgttccatgtatctattccatactgccatcattccattcctgtct 590

                                                                       
Query: 124 gtgtctgtctatgtgtctgtggagaactgctattattctgttctgaaaagaggcctaaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gtgtctgtctatgtgtctgtggagaactgctattattctgttctgaaaagaggcctaaaa 530

                                                                       
Query: 184 atatgtatttcatggttagtgcaactggggcagaagtgctagatatccttaattacacag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 atatgtatttcatggttagtgcaactggggcagaagtgctagatatccttaattacacag 470

                                                                       
Query: 244 ggcttgaagacattccagactttgagagggaggatacctctagtgtctcaatcaggactg 303
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 469 ggcttgaagacattccagactttgagagggaggagacctctagtgtctcaatcaggactg 410

                                                                       
Query: 304 gttacaggctcaggtagccatggccacttttcctcctgaaggagggtagaggatgaatct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gttacaggctcaggtagccatggccacttttcctcctgaaggagggtagaggatgaatct 350

                                                                       
Query: 364 ttttgtgtttatatttgttggtgttcctgttgaataattgtctactcttgcatttcttgt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttttgtgtttatatttgttggtgttcctgttgaataattgtctactcttgcatttcttgt 290

                                                                       
Query: 424 tatggggcaacattgactttgacagatttaggattggacaagtaccttttacccttccag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tatggggcaacattgactttgacagatttaggattggacaagtaccttttacccttccag 230

                                     
Query: 484 aattatttctcagttactttaaagat 509
           ||||||||||||||||||||||||||
Sbjct: 229 aattatttctcagttactttaaagat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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