BAC Information

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BAC

Clone NameMSMg01-433B02
Chromosome15 (Build37)
Map Location 40,294,542 - 40,294,675
singlet/doubletsinglet
Overlap genenone
Upstream geneRims2, Tm7sf4, Dpys, Lrp12, LOC100039130, LOC670013
Downstream geneLOC664872, Zfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433B02.T7 (MSMg01no433_b02.b1)MSMg01-433B02.TJ (MSMg01no433_b02.g1)
ACCAG524936AG524937
length744722
length of high quality
(start - end)
465 (41 - 505)347 (72 - 418)
definitionCHROMAT_FILE: MSMg01no433_b02.b1 PHD_FILE: MSMg01no433_b02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:03 2005CHROMAT_FILE: MSMg01no433_b02.g1 PHD_FILE: MSMg01no433_b02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTATTTAGCTAAGAGACCCAATTTTTAATGGGGTTATTTGATTTTCTGG
AGTCCACCTTCTTGAGTTCTTTAAATATATTGGATATTAGTCCCCTATCA
GATTTAGGATAGGTAAAGACCCTTTCCCAATCTGTTGGTGGCCTTTTTGT
CTTATTGACAGTGTATTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGT
CCCATTTGTCGATTCTCGATCTGAAAGCACAAGCCATTGCTATTCTATTC
AGAAATTTTTCCCCTGTAACCATATCTTCAAGGGTTTTCCCTACTTTCTC
CTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACT
TATATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCGCATTCTT
CTACAGGATAACTCCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTTTT
TTCCACTGGATGGCTCCTTGCTCCCTTGTCACAGATCAAGTGCACATAGG
ACCGTGAGTCTTACTTTCCGGGTTTTCACTTCTCACTCCTTGCTCTATCT
GCCTCGCTCCTTTCCCTCTTCCCATGCTGCCCTTTCATCTTCATCTGTTT
CCGCCCCCTACCTTTTACGTCTCGTTCTCTACTTCTTTCTGTTCCATACA
AATCTTTCTCTTTCTCTCTCATATCGCTCTCTCTTCTCCTTATT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAACTGTGGCTGCATGCATCCTAGCTTAAG
TTCTCCACCATTGAACTGTATTGTCAGTCTGTGGGAATCCTAAAAATATG
ACCAATGAGATATGAATGCCCATTCCATTGATTGGCTTTGTGTTCCCACA
TTCTTATCTCTTATTTCCTTATCTTTGAAAGGTGAAGCAAAAATCATACT
TGAGGGTTTTTAAGCTTCTAATAAACAATAAACTTTAAGCACACATGATT
GTTCTTATTAATTGTATGTACACACTCATTATTTTGGGATTGGGATTTTG
GCTATTTCCCTTTCATCATGAAGATTAGCTATACCACTTAAATGAGTCTC
TGAAGTTTTGACAGTAGCTTAGATTTGACCTATTACTACAACACTGGGAG
TCAACTACGTTATTTTCTTTGTGTTCTCTATAGGACATAGTATTCAGAAT
ATCGTATTATCCTTAATTCGTCCTCGTTTTCCCTTCGTTCCCCTTTTCAT
TTTCCTTCCCTTCCCCTTTTCCCTCCTCTTTCTTTATGTTGTCCCTTCCT
CTCCCTCCTTTCCCCTCCATTTCTCTTCCTCCCTCTTCTTCTCCTCCTTC
TCTCTTCTTCTCCCTCCGTTCCTCTTCCATTCCTCCTTTCCTCTTCATAT
CTTTCCCCTTTCTTTCCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_b02.g1 MSMg01no433_b02.g1 CHROMAT_FILE:
MSMg01no433_b02.g1 PHD_FILE: MSMg01no433_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:03 2005
         (347 letters)



>mm_chr15_40294342_40295088
          Length = 747

 Score =  259 bits (134), Expect = 2e-73
 Identities = 134/134 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactgtggctgcatgcatcctagcttaagttctccaccattgaactgtattgtcagtctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactgtggctgcatgcatcctagcttaagttctccaccattgaactgtattgtcagtctg 260

                                                                       
Query: 61  tgggaatcctaaaaatatgaccaatgagatatgaatgcccattccattgattggctttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggaatcctaaaaatatgaccaatgagatatgaatgcccattccattgattggctttgt 320

                         
Query: 121 gttcccacattctt 134
           ||||||||||||||
Sbjct: 321 gttcccacattctt 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)