BAC Information

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BAC

Clone NameMSMg01-433J10
Chromosome15 (Build37)
Map Location 12,362,454 - 12,362,598
singlet/doubletsinglet
Overlap genePdzd2
Upstream geneLOC100039772, Npr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3
Downstream geneLOC100040109, 6030458C11Rik, Rnasen, Cdh6, LOC100039907, LOC666686
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433J10.T7 (MSMg01no433_j10.b1)MSMg01-433J10.TJ (MSMg01no433_j10.g1)
ACCAG525336AG525337
length817795
length of high quality
(start - end)
145 (70 - 214)---
definitionCHROMAT_FILE: MSMg01no433_j10.b1 PHD_FILE: MSMg01no433_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:43 2005CHROMAT_FILE: MSMg01no433_j10.g1 PHD_FILE: MSMg01no433_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATAXXXXXXXXXXXXXXXXXXXXXXXXXTTCAACAACATCCGCGGAATTC
TACCTTTCCCGCACCCAGAAAGATTTTTGTTAAAGTGTGTGTCTTCAGCA
CCCAGTTACCACTTATCTAATGCATCCGAGCACCATCCACAGCAATTTTG
TCACTTGAAGAATATTTTTGTTACACAGACTTATTTTGTGAGCCTGCACA
CATGCGCATGAGTGGATGCTGGAACACAGCACGCAGAGTCACTTCTTCTT
TCCACTGTGGTGGCACCACGATGGCTCAAACTTACGCTCCCAGGCTTTGC
AGCAAGACCCTTTATATTCTGACCCATCTTGCTGGCCCAAGGCTTTCTTA
CTAGCCATCACAGTCAATTGGAAGAGAGACTGATAGTGTTACCTCTTGTC
TTGCGTATCACTCCCCTACGCATCCCATGTACTCCCCTTTACCCCACCCT
AATTAACACTTCCCTACCTCTCTAATGCTCCCCTTTCCAAACTTCCCAAT
GACTTCCCTACCTCCTCCCGCTTCTTTTTCCCCCCCCCCTTTTCTTCTCC
CCCCTGCTTTTTCTCCCTATCTTCTTCAAATATCCCTTCTTTTATTCCCC
TACCATCACTCCTCTTCTCCCCACTATCCTCTTTTCTATCTCCTTTCCCT
ATCTTATATTCTTCTCCTCCCTTCTTTTTCCCTCTTATCTCATCCTACCC
TTTTCTTTCTTTCATCTCTAATCCCCCTCCCCTCCCCTCCCCCATCCTTT
TACTTCCTCTCCACCTCCCCCACCACATAACTATCTTTTTTTCTCCCTTC
CCCCTCTTCTCCTCTAT
TGCTTTGTGTGGCCTGGCGGCGCCTGTCTCCCGACTTTAGGTGACCTATA
GATTTTCCGCGTACTTCCCGAAGTGTGCTGGAGAACAGCAGGTTTGCGGG
GCGAGGGCTGTACTGGTCCCAGTGGAGATTGAGTAATGGGGTGAGGTGCT
CCCTCCTCCCTCCCCTCTCCCTTTCCCCTTTCCCTTTCCCTTTTTCCCTC
TCCCTCTCCTCCCTCCCTTCCCCCCCCCTCCTTCCTCCCTCTCCTCTTTT
CCTTCCTCTTTCCTCCCTCCTTCTTCCTCCTCCCCCCCCCCCCCTCCCTC
CTTTCCTCTCCTCTCCTTTTTTTTCTCCCCCTCCCTTTCCCCCCCCTTCC
TCCCTCCCCCTTTCTCTTCCCTTCTCCTTCTTTTCCTTTTTCCCTCTCCC
TCTCCCTCTCTCCCCCTTCCTTCCTTCTCCCCCTTTTCCTCTTTCCCCTT
TTCCCCCTTTTCTCCCTTCCCCTTCTTCTCCTTCTTTCCCTTTTCCCCTT
TTTCCCCCCTTCCCCCCCCTCCCCCCTTTCCCCCCCTTCCCCCCTTTCCC
CTTTCCCTCCTCTCCCTTTTTTCCCCTTTCTCCTTCCCCTTTTCCCTCTT
TCCTTTCCCTTTCCCCCCTTTCCCCTCCCCCCCTTCCTTCTTTTCTCTCC
CCTCCCTCTTCTCCCCTCTTCCCCTTCCTTTCCCTTCCCCTCCTTCTTCC
CTTCTCCCCCCCCTCCTTCCCTCTCTCCCCTCTCTTTCCCCTCTTCCCTC
TCCTCCTTTCCCTTCTCCTTTCTCCTCCCTTATCCTTTTCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_j10.b1 MSMg01no433_j10.b1 CHROMAT_FILE:
MSMg01no433_j10.b1 PHD_FILE: MSMg01no433_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:43 2005
         (145 letters)



>mm_chr15_12362254_12362798
          Length = 545

 Score =  273 bits (141), Expect = 4e-78
 Identities = 144/145 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagatttttgttaaagtgtgtgtcttcagcacccagttaccacttatctaatgcatccga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagatttttgttaaagtgtgtgtcttcagcacccagttaccacttatctaatgcatccga 260

                                                                       
Query: 61  gcaccatccacagcaattttgtcacttgaagaatatttttgttacacagacttattttgt 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 gcaccatccacagcaattttgtcacttgaaaaatatttttgttacacagacttattttgt 320

                                    
Query: 121 gagcctgcacacatgcgcatgagtg 145
           |||||||||||||||||||||||||
Sbjct: 321 gagcctgcacacatgcgcatgagtg 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 545
Length adjustment: 8
Effective length of query: 137
Effective length of database: 537
Effective search space:    73569
Effective search space used:    73569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)