BAC Information

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BAC

Clone NameMSMg01-434M21
Chromosome15 (Build37)
Map Location 63,159,012 - 63,159,476
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040430, Tsg101-ps
Downstream geneEG239502, EG432959, LOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik, Ddef1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434M21.T7 (MSMg01no434_m21.b1)MSMg01-434M21.TJ (MSMg01no434_m21.g1)
ACCAG526259AG526260
length730767
length of high quality
(start - end)
547 (66 - 612)465 (69 - 533)
definitionCHROMAT_FILE: MSMg01no434_m21.b1 PHD_FILE: MSMg01no434_m21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:19 2005CHROMAT_FILE: MSMg01no434_m21.g1 PHD_FILE: MSMg01no434_m21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
CAGGCTTTTCTGATTTTGCATAGATTTATTTTTTTTCACATTTTAAAGTC
TTTAATGGGTTGTGGTCTTGCTTATATTTCTTAATAGTTACAACTCTAAA
CTAGTTCAAGCACATTTACTTGTCAAGCATCACCCTTTTTATATTTTTTT
GCTCTCTCTTACTGTAGACTGGAATGAGCCACACCCATGACAGAGATTGA
ATGCTATACTGTCTTGAAATTTTCTCCATCAAAATTTCATCCATTACTTT
TGAATTACAGCTCATGCTATTTCCCAAGACATGGGGGAAATAAAGTTGGA
TTCTTTGCCAGAATGTAGCAAGATTTGTCTCTTAGCATTTGAAGCGGATA
GCTCTGGGCTCTTCTGGCTTTTACAATTTCTATTGAGAAACTAGCTGTTA
TTCTGATGGGTTTCCCTTTATATATGATGTGTTTTTCTATATTTTTCTTG
CTGCTTTCACTACCTTCTCTTTGNTTTGAATATTTAGTGTTTTAACTTTA
ATGTTTCCTGGGGAGTTTCTTTTCTGGCCTCCTCTATTTGGAGTTCTCTG
TGCTTCTTGGATTTGTATGAGTCTGCCCTCTACTTCATTTCTCCATAAAA
CCCATCCTGTCCCCAATCTCAGTACCCACAATCATCACTATGCGTACACA
GCACATAATGCATCATGGGACATTTTTGTT
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATCTTCTGGGGACCAACCACAGGAGAGACTCA
TCAGCTCCTGCATTTGCAGATGGCTACTCATGATGGACACTCAAGGTTGG
CTTGCTGCCTTTTCTTTCTAAGTGAGGAACATGTAATATACTGAAGTCTG
ATCACAGTTGTCAGTGCCTAGTTCACAAGATGGGATGACCATGGTAATGT
GGGTACACTGTGAAATTCACAAACCTTATATGAAACATAAATAGCATAAG
TAGAAGTTAGAGACATGGGGAATTAACGTAGGGAGGAGAAAGATGGGTCA
CTCAGAAACTTCTGTTCTCTCAGAAATGTTAGGAAAAGTGCTCTTTTTTA
TTGGTTATTTTATTTATTTACATTTCAAATGTTATCCCCCTTCCTAGTTT
CCCCTCCTCAAATTCCCTATTCCCTCCCCCTTACCACCTGTTTCTATGAG
AGTGCTCCCCCTCCCACCCATCCATTCCTGCCTCATTTGCCCTCGCNATT
CCCTGTACGAGGGCATCCAGCCTTCCCAGGATCAAGGGGCCTCCCCTCTC
TTTGATGCCCAACAAGGGAATCAATCCTCTGCTTTCTATTGGACTGGAGA
AAGGGGCCTTTCCTGGCTAACCCTTTGGGGGGAAGTTAATACCTTGGGAG
GCCTCGAAGGGTCAAATGGTTGAAAATGGCCTTTTCTAGGGTTGGAAAAC
CCCTTCTCTCTTTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_m21.g1 MSMg01no434_m21.g1 CHROMAT_FILE:
MSMg01no434_m21.g1 PHD_FILE: MSMg01no434_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:19 2005
         (465 letters)



>mm_chr15_63158812_63159676
          Length = 865

 Score =  853 bits (441), Expect = 0.0
 Identities = 459/465 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttctggggaccaaccacaggagagactcatcagctcctgcatttgcagatggctact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcttctggggaccaaccacaggagagactcatcagctcctgcatttgcagatggctact 260

                                                                       
Query: 61  catgatggacactcaaggttggcttgctgccttttctttctaagtgaggaacatgtaata 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgatggacactcaaggtcggcttgctgccttttctttctaagtgaggaacatgtaata 320

                                                                       
Query: 121 tactgaagtctgatcacagttgtcagtgcctagttcacaagatgggatgaccatggtaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 tactgaagtctgatcacagttgtcagtgcctagttcacaagatgggatgaccatggtaac 380

                                                                       
Query: 181 gtgggtacactgtgaaattcacaaaccttatatgaaacataaatagcataagtagaagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgggtacactgtgaaattcacaaaccttatatgaaacataaatagcataagtagaagtt 440

                                                                       
Query: 241 agagacatggggaattaacgtagggaggagaaagatgggtcactcagaaacttctgttct 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 agagacatggggaattaacgtagggaggagaaagatgagtcactcagaaacttctgttct 500

                                                                       
Query: 301 ctcagaaatgttaggaaaagtgctcttttttattggttattttatttatttacatttcaa 360
           |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 ctcagaaatgttaggaaaagggctcttttttattggttattttatttatttatatttcaa 560

                                                                       
Query: 361 atgttatcccccttcctagtttcccctcctcaaattccctattccctcccccttaccacc 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgttatcccccttcccagtttcccctcctcaaattccctattccctcccccttaccacc 620

                                                        
Query: 421 tgtttctatgagagtgctccccctcccacccatccattcctgcct 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtttctatgagagtgctccccctcccacccatccattcctgcct 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)