BAC Information

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BAC

Clone NameMSMg01-434P08
Chromosome15 (Build37)
Map Location 43,029,575 - 43,029,803
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039268, LOC100039197, Angpt1, Rspo2
Downstream geneLOC675960, Eif3s6, Ttc35, LOC100039288, Tmem74, LOC100039309, Trhr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434P08.T7 (MSMg01no434_p08.b1)MSMg01-434P08.TJ (MSMg01no434_p08.g1)
ACCAG526374AG526375
length760758
length of high quality
(start - end)
475 (32 - 506)256 (67 - 322)
definitionCHROMAT_FILE: MSMg01no434_p08.b1 PHD_FILE: MSMg01no434_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:31 2005CHROMAT_FILE: MSMg01no434_p08.g1 PHD_FILE: MSMg01no434_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTTTGT
TTTCTCTGTACCCCATTTTTAATAGGAATATTTGATTTTCTGGAGTCCAT
CTTTTGAGTTCTTTATATATATATTGGATATTAGTCCCCTATTTGATTTA
GGATTAGGAAAGATACTTTCCCAATCTGTTGGTCGCCTTTTTGTCTTATT
GACAGTGTCTTTTGCCTTACAGAAGCTTTGTAATTTTATTAAGTCCCATT
TGTCATTTCTCAATCTTACACAAGCCATTGCTGTTCTGTACAGAAATTTT
TCCCCTATGCCCATATCTTTGAGGCTTTTCCCCACTTTCTCCTCTATAAG
TTTTAGTGTGTCTGGTTTTACATGGAGTTCCTTGATCCATTTAGACTTGA
CCTTAGTACAATGAGATAAGAATGAATCAATTCGCATTCTTCTACATGAT
AACTGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCCATCTTTTTTTCC
ACTGGATGGTTTTAGCTCCCTTGTGAAAATCAAGCGATCTTGTGCGTGTG
GCTCCACTTTCTGGGTCTTCAATTCCTATCCTATTTGTCTACCTGGTCTG
CCGTTGTTCCAGCTCTCTTGTCCTTTTTTATCCCCTTTGTTTCCTTATCT
TCTCCTTTTTGTTTATGTCCTTTTTGCTTTCTACATTATCGCCCTTTTTC
TTTTTACCTCATTACTTTTTCTGTCTATCTCTTTTTTTCCTTTTTTTTTT
CTCTTTTGAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTCCCAGCCTAACTCTTTCCCCAGAGGGTGGCT
CATAGAGAGCTATGAGTCTGGGGAATACCAGAGCAAGAGCTTGAACACAC
TTAAAATTCAGCTGAAACTCAAAACCAACTAACAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCAAAAGGAGGCTGC
CAGGAGCTGGGAAAGAGAGCCAAGCAGGATTGGGTCTTTGAGGTCTTACT
GGGCTGCCCTTCTGCCTTGGTGATAAGAAAGACAGCACCCAGCTCCTGCC
TTAGCCCACATAGGAGATGTCTTACCATCCTCTCACTCATCAGACACAAT
GCCGTGTGTGCAGCAACTCTCACTGTCTATTGAGTGAGGGCTCTGAGAAA
CAAGGCTGAGTTTGGTCATTTAGTGGCAAGGGAAAGGAGCTGGGACTGTA
ACTCTGGCCTATGTGGCTGCCATGCTGACATCCTTGCTCTGTGCAGATTA
CCATGCTGGCCTCTGGATGAAGAATCTAAGGTCTGCTTCTGTTCCCTGCC
ACCATCTGCCTTTAAGCCCGGGGATTAAAAGGAAAGGAAAAAAACCGGAG
GTAAAAGGAATTTTTCGGTTCCCCCAAAAAAAACAAATTTGTTCCATTTT
CAAGAGGTGAAAAAAGCTTTCTTTACCAAAAAACAAATCCTAATACACAC
TTACATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_p08.g1 MSMg01no434_p08.g1 CHROMAT_FILE:
MSMg01no434_p08.g1 PHD_FILE: MSMg01no434_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:31 2005
         (256 letters)



>mm_chr15_43029375_43030030
          Length = 656

 Score =  379 bits (196), Expect = e-110
 Identities = 228/256 (89%), Gaps = 27/256 (10%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcccagcctaactctttccccagagggtggctcatagagagctatgagtctggggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcccagcctaactctttccccagagggtggctcatagagagctatgagtctggggaat 260

                                                                       
Query: 61  accagagcaagagcttgaacacacttaaaattcagctgaaactcaaaaccaactaacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accagagcaagagcttgaacacacttaaaattcagctgaaactcaaaaccaactaacaaa 320

                                                                       
Query: 121 aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagccaaaaggagg 180
           |||||||||||||||||||||                           ||||||||||||
Sbjct: 321 aaaaaaaaaaaaaaaaaaaaa---------------------------gccaaaaggagg 353

                                                                       
Query: 181 ctgccaggagctgggaaagagagccaagcaggattgggtctttgaggtcttactgggctg 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctgccaggagctgggagagagagccaagcaggattgggtctttgaggtcttactgggctg 413

                           
Query: 241 cccttctgccttggtg 256
           ||||||||||||||||
Sbjct: 414 cccttctgccttggtg 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)