BAC Information

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BAC

Clone NameMSMg01-436K13
Chromosome15 (Build37)
Map Location 60,658,399 - 60,658,721
singlet/doubletsinglet
Overlap gene9930014A18Rik
Upstream geneLOC665602, EG632248, LOC665613, 4933412E24Rik, LOC100040266, LOC623048, LOC211832, LOC623094, EG632412, LOC100040311, D330050I23Rik
Downstream geneA1bg, LOC100040323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436K13.T7 (MSMg01no436_k13.b1)MSMg01-436K13.TJ (MSMg01no436_k13.g1)
ACCAG527673AG527674
length713720
length of high quality
(start - end)
322 (333 - 654)168 (335 - 502)
definitionCHROMAT_FILE: MSMg01no436_k13.b1 PHD_FILE: MSMg01no436_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:47 2005CHROMAT_FILE: MSMg01no436_k13.g1 PHD_FILE: MSMg01no436_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGTTTTTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGTGCTTCCATGAACAACTTAGTGTGACAGTATCTC
AAAACACGTGAAAGGGAGAAAACTATAGAAAGCTTACCTATCATGTACAA
CAGCCCAGGTTCTGTCCTCTGCACCACAAAGAAGAAATCATAAATAGTCA
ATATATGAATTAGAAAACAGTGGGAAATAGCATATAGTCATGAGCTAAAT
TATACATAATCAAGTGATAAGGTGTGAAATACATGTCTGTTGGATGGAAA
GGGGGTTAGCAGAGAGACTCCTATTTTTTTTAGGGGGACCTCCTTAGGTG
AGATGACAGGACAGGAGGGGAAGCAATTGTAGAGCACACCTTTGAAAAGC
TGTCACTCACAGCAGCCTCAGAGCCAGAGCCACCAGCTCCAGCCCTTCAA
TGCTTACCATCCTACATAATAGGACTATTGGGTTTATAGTCTTAGGTTTT
TTTCTACTAAAACTGGTAAGCTCAACTTTCATTCACTAATTATTTGAGAT
GAACGAAGCCTTTTTAGAGACACTGTATAACCTCTGACCCAGTGCTCCAT
GTGGCCAGACGGAGGTTGAGCCCTTGACATTCATTAATTTAAAAAAATCT
GCATCAGACTATGGCTATCATAGGTATCACATGCTTACTTGCTGATTGCT
TCATATAACCATG
NCAAAAGGTTCAATGATAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTTTTTAAGTGTTA
AAAAAATTGCAGAACATTTGATCAAGCTATGACCCCAAGATAGTGTTGTT
TACTGGAAAAATCTGTTTTTAGTTGTGGTGTGGCTCAGCCCTACCATAAA
CCTTTAATCCAAGAGCTTTCTACTTACTGTAAACAGGATTAAATAAAGTT
AAGCAACCAGTTGTCAGGAAGTGAACATAGGAAAATAATATGAAGATCAT
GAGAGGAAGTTGGGAGGACAAATATTTTTTTTGCACAGGAAATAGAGGGG
AGGGACATTTTGAAGTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTT
TAGGCAGTGTGAAGAACTGCACATTTTGTCTTTTGAGACATCGGCTGAGG
AGGAAGGTCAGCTGGGTGCTTTCTCTGCCTCTCTGAGCATCTTTCACCCC
AGCCTCTGGCCCCTAAGCCTTTATCAATAACATCAAATGATTGAGATTTT
GACAAAAAACAATATTAAAGCTAGCTAACCATGATAATATTTCGTTAAAA
ATGTTCTATGATCCGTGTTCTTTATTTCACTGGAGGTATCTCAGTCAAAC
GTTTTATTTCTCCTATTCTGCTGAGTGAATTGCCCTTTCCCTCCAGTCCT
CCCTATCTCTCCCAATAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_k13.b1 MSMg01no436_k13.b1 CHROMAT_FILE:
MSMg01no436_k13.b1 PHD_FILE: MSMg01no436_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:47 2005
         (322 letters)



>mm_chr15_60658207_60658928
          Length = 722

 Score =  543 bits (281), Expect = e-159
 Identities = 312/323 (96%), Gaps = 2/323 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggggacctccttaggtgagatgacaggacaggaggggaagcaattgtagagcacacctt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gggggacctccttaagtgagatgacaggacaggaggggaagcaattgtagagcacacctt 456

                                                                       
Query: 61  tgaaaagctgtcactcacagcagcctcagagccagagccaccagctccagcccttcaatg 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgaaaagctgtcactcagagcagcctcagagccagagccaccagctccagcccttcaatg 396

                                                                       
Query: 121 cttaccatcctacataataggactattgggtttatagtcttaggtttttttctactaaaa 180
           ||||||||||||  |||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 395 cttaccatcctaggtaatgggactattgggtttatagtcttagatttttttctactaaaa 336

                                                                       
Query: 181 ctggtaagctcaactttcattcactaattatttgagatgaacgaagcctttttagagaca 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 335 ctggtaagctcaactttcattcactaattatttgagatgaacaaagcctttttagagaca 276

                                                                       
Query: 241 ctgtataacctctgacccagtgctccatgtggccagacggaggttgagcccttgacattc 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttgtataacctctgacccagtgctccatgtggccagacggaggttgagcccttgacattc 216

                                  
Query: 301 attaatttaaaaaaa--tctgca 321
           ||||||| |||||||  ||||||
Sbjct: 215 attaattaaaaaaaaaatctgca 193


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)