Query= MSMg01no437_o14.b1 MSMg01no437_o14.b1 CHROMAT_FILE:
MSMg01no437_o14.b1 PHD_FILE: MSMg01no437_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:28 2005
(520 letters)
>mm_chr15_47617874_47618790
Length = 917
Score = 897 bits (464), Expect = 0.0
Identities = 503/518 (97%), Gaps = 5/518 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaatctgagtcccttcagtctgccttggaactaggtgtccttaccagaggtagt 63
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ggaattcaatctgagaccattcagtctgccttggaactaggtgtccttaccagaggtagt 658
Query: 64 tgacctttggagggagataaagggaggttcctggaggattaatggtggttaccagtgaac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tgacctttggagggagataaagggaggttcctggaggattaatggtggttaccagtgaac 598
Query: 124 agaaaacactttaagagatctgcttttctagtaaacctttaggcctgtttaactaattac 183
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 597 ggaaaacactttaagaaatctgcttttctagtaaacgtttaggcctgtttaactaattac 538
Query: 184 aatccttctgtttacacagtcaaagttcttttgtttagaacaatgtcaacttcgctgccc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aatccttctgtttacacagtcaaagttcttttgtttagaacaatgtcaacttcgctgccc 478
Query: 244 tttggggggagaggggctttggatttgacagctatgaatactacaaaaggccagcatgta 303
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 477 tttgtggggagaggggctttggatttgacagctatgaagactacaaaaggccagcatgtt 418
Query: 304 gttagaggttagattttgaattcagaacttaaactctgtctctaccacctgattatctat 363
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 417 gttagaagttagattttgaattcagaacttaaactctgtctctatcacctgattat---- 362
Query: 364 tttcaccacagataccttccttttaaaatagtaataactggcctcaggctcctagagtta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tttcaccacagataccttccttttaaaatagtaataactggcctcaggctcctagagtta 302
Query: 424 aatgagttaatttttaattgcattcatttttttattcttttttt-aaactgtaaatggta 482
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 301 aatgagttaatttttaattgcattcatttttttattcttttttttaaactgtaaatggta 242
Query: 483 taataattttcaatgtgaaaggaataaaaattttataa 520
||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taataattttcaatgtgaaaggaataaaaattttataa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 917
Length adjustment: 10
Effective length of query: 510
Effective length of database: 907
Effective search space: 462570
Effective search space used: 462570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_o14.g1 MSMg01no437_o14.g1 CHROMAT_FILE:
MSMg01no437_o14.g1 PHD_FILE: MSMg01no437_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:28 2005
(561 letters)
>mm_chr15_47463356_47464315
Length = 960
Score = 1023 bits (529), Expect = 0.0
Identities = 553/561 (98%), Gaps = 1/561 (0%)
Strand = Plus / Plus
Query: 1 cacccctaagaaagaactataggcaactaatgactgctgggagagggagaactaacctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacccctaagaaagaactataggcaactaatgactgctgggagagggagaactaacctgt 260
Query: 61 actagggatgagacccttactggttatctaacacaatatggtcagttctgaaaacatata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actagggatgagacccttactggttatctaacacaatatggtcagttctgaaaacatata 320
Query: 121 cacatcaacaatagaaactgactaaactggttgcctttatacttatatttatgtaaactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 321 cacatcaacaatagaaactgactaaactggttgcctttatacttatatttatgcacactt 380
Query: 181 atgcatacatacacatatgtacatgaacgtttgtggtgaaatagttaaagaaaaaaatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcatacatacacatatgtacatgaacgtttgtggtgaaatagttaaagaaaaaaatct 440
Query: 241 gatcagtttgataggtaggtacttcagtggagttggagtgagagtgtctgcaaagagctg 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 gatcagtttgagaggtaggtacttcagtggagttggagtgagagtgtctgcaaagagcag 500
Query: 301 gaggaaatcaaataaatgaaaaaataatgtaattctatattagctaaaatatatattaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggaaatcaaataaatgaaaaaataatgtaattctatattagctaaaatatatattaag 560
Query: 361 aataatgcttttgtagtaagatattttttcaatttctggtaggtaaaaattacaaaatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aataatgcttttgtagtaagatattttttcaatttctggtaggtaaaaattacaaaatat 620
Query: 421 cattttgtatcacttctttaataacatcactcaatttagtaaaataatcctcataagtaa 480
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catttta-atcacttctttaataacatcactcaatttagtaaaataatcctcataagtaa 679
Query: 481 agtaatatatcagatgatagatataataaatatgtaaatattttgtcatatcactttcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 680 agtaatatatcagatgatagatataataaatatgtaaatattttgtcatatcactctcaa 739
Query: 541 atataactgtaaaaaatatca 561
||||||| |||||||||||||
Sbjct: 740 atataacagtaaaaaatatca 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 960
Length adjustment: 10
Effective length of query: 551
Effective length of database: 950
Effective search space: 523450
Effective search space used: 523450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
