BAC Information

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BAC

Clone NameMSMg01-439F19
Chromosome15 (Build37)
Map Location 97,990,952 - 97,991,389
singlet/doubletsinglet
Overlap genenone
Upstream geneAmigo2, BC038822, LOC100043354, LOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8
Downstream geneAI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439F19.T7 (MSMg01no439_f19.b1)MSMg01-439F19.TJ (MSMg01no439_f19.g1)
ACCAG529733AG529734
length762821
length of high quality
(start - end)
431 (65 - 495)48 (66 - 113)
definitionCHROMAT_FILE: MSMg01no439_f19.b1 PHD_FILE: MSMg01no439_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:28 2005CHROMAT_FILE: MSMg01no439_f19.g1 PHD_FILE: MSMg01no439_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CATAGAAATTACCTCAATAACTAAGTCTGACAAGACAGAGTGTTGGAGAA
TGTGCAGGTACTGGCTGGATCAGCGCTTTCCTCCCTGAGTTGCTTTGGTC
ATAGTGAGTCAACGAAGGAACCCTAACTAAGACAGCGGGCTACGAGAACT
TTCACTCTCTTGGTTGATTGGCAGTGCGTTTACCACTGGAGAGCTGAAGA
CTATGATTCAGCAAATCCAGCCATGCATAAAGTTTAGAGGACTAAACCTG
TGTTATAAACACCAGGATACACACACCAGGATAACCCACAGCAGGACTGC
CTCAGCAGGAGCACTCCCTAACAGGAGAGTGTGGATAAAATACAAGGTAG
GAGAAGTCCGTTTCTCTCATCGCCCCTGCCCTGCCCCCATCCGGCCCCAC
CCTGAAGCCCCACCAAGAGCTTGTTGTCTGGTTATCTGATCCCAAATGGT
CAGCCCTGAAAATATACAGATGAGTAACAGTATACCGATTGAGCTGGTCG
TGCTTACACACTCACACACACTGCCTCACTTACCCTAATCTCTCCCTCGT
CCCCCCATTTATTTTTCCCCCCTGTTGCCCCCCTGTAATCCGCAACCACA
TCCCAGGTATTCTTCCCCCTAATCTTTGTTCCCACACTCCTTCTCCCTGT
CTTCCCTTTCTCTCCCTCCTCCCCTTCTTTACCTCCCCTCTTATCCGTTC
TCTTCGCCTTCG
GTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTGGGTGCAATGAAAAGACCTAGACTGAGGATTGG
GGGGGTGGGTGGCCCCCCCCCCCCNCCCCCCCCNNCCCCCCCCCCCCCTT
TTCTTTTCTTTTTCTGGGGCGCTTCTTTCCCCCCCCCTCTCTTTTCCCTT
CCCTCCCCCCTTCTTCTTTCCCTCCCTTTCTCCCTCTCCCCCCCTTTTTT
TTCCCCCTTTGCGTTTTCCCCCCCCTCCTCTCTTTCCTCCTTCCCGTCTC
TCCCCCCCCGGCTTCTCCTACCTTTTCGNGGGCCGCCCCTCCCCCTCTTT
CCTGCCTTCTTTTTTTTCTTCCCCCTTTTCCCTCCACTTCTCCATCTCCC
CTCGTCCTTCCTCTCCACTCCTTTCCCTCCCCCCCTTTCCCCCCCCCCCC
CCCTTTTTTCCCTTTTTCCCCTCTCTTTCCCTCTCGTTCCCCCCCCCCCT
TTTCTCTTATCCCCCTTCCCCCTCTTTTTCCCCCCCTTTTTTTCCCCCCT
TTCCCTCCCTTTCCCCCCCTATCCCCTCCTCTCCCCCCTTATTTCCATTT
TTTTTCTCCTTTTTCTTCCCCTTTCCCCTCTTTTTCCCCTTCCCTCTCTT
TTATCTTTTTCCCCCCACTCTCTCCCCCCCTCTCTCCCCCTCCCCCCCTC
CTTCTTTTTTCTTTTTCCCTTTACTTTCCCCACGCCTTTCCCCTTCTTCC
CCCCTCCCTTTTCCCTCCCCTTTTTCTCTCCTCCTTTTTTTTTCCTCCCC
TTTCTTTACCCCTCCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_f19.b1 MSMg01no439_f19.b1 CHROMAT_FILE:
MSMg01no439_f19.b1 PHD_FILE: MSMg01no439_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:28 2005
         (431 letters)



>mm_chr15_97990752_97991582
          Length = 831

 Score =  756 bits (391), Expect = 0.0
 Identities = 424/439 (96%), Gaps = 9/439 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   caataactaagtctgacaagacagagtgttggagaatgtgcaggtactggctggatcagc 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caataactaagtctgacgagacagagtgttggagaatgtgcaggtactggctggatcagc 260

                                                                       
Query: 61  gctttcctccctgagttgctttggtcatagtgagtcaacgaaggaaccctaactaagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctttcctccctgagttgctttggtcatagtgagtcaacgaaggaaccctaactaagaca 320

                                                                       
Query: 121 gcgggctacgagaactttcactctcttggttgattggcagtgcgtttaccactggagagc 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 gcgggctacgagaactttcactctcttggttgatcggcagtgcgtttaccactggagagc 380

                                                                       
Query: 181 tgaagactatgattcagcaaatccagccatgcataaagtttagaggactaaacctgtgtt 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaagactacgattcagcaaatccagccatgcataaagtttagaggactaaacctgtgtt 440

                                                                       
Query: 241 ataaacaccaggatacacacaccaggataacccacagcaggactgcctcagcaggagcac 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaacaccaggagacacacaccaggataacccacagcaggactgcctcagcaggagcac 500

                                                                       
Query: 301 tccctaacaggagagtgtggataaaatacaaggt---ag-----gagaagtccgtttctc 352
           ||||||||||||||||||||||||||||||||||   ||     ||||||||  ||||||
Sbjct: 501 tccctaacaggagagtgtggataaaatacaaggtgggagagtgggagaagtca-tttctc 559

                                                                       
Query: 353 tcatcgcccctgccctgcccccatccggccccaccctgaagccccaccaagagcttgttg 412
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcatcacccctgccctgcccccatccggccccaccctgaagccccaccaagagcttgttg 619

                              
Query: 413 tctggttatctgatcccaa 431
           |||||||||||||||||||
Sbjct: 620 tctggttatctgatcccaa 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)