BAC Information

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BAC

Clone NameMSMg01-439J10
Chromosome15 (Build37)
Map Location 85,083,604 - 85,083,845
singlet/doubletsinglet
Overlap geneFbln1
Upstream geneParvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l, Arhgap8, 3110043J09Rik, Phf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2
Downstream geneAtxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523, Cerk, LOC100042300, Tbc1d22a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439J10.T7 (MSMg01no439_j10.b1)MSMg01-439J10.TJ (MSMg01no439_j10.g1)
ACCAG529906AG529907
length795775
length of high quality
(start - end)
179 (44 - 222)242 (75 - 316)
definitionCHROMAT_FILE: MSMg01no439_j10.b1 PHD_FILE: MSMg01no439_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:45 2005CHROMAT_FILE: MSMg01no439_j10.g1 PHD_FILE: MSMg01no439_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATAAATTGTGGTCGCTAAACGACTCCTATTTTCANAAATCCGCGGAA
TTCCCAGATTTCCCATCCGTTCCCCTCATGATGCCTTTTTTCTCCTGGGT
TATTTTAATGTAAAGTTTTTAAAATTTATTTTTACAAATTTCTTAATTTT
TTTAATAAAACTTTTTTTCTTTAAGGTAATGCATGTCAGGACTGTGCACA
GAGGAAGTTGGAAGAGAATGGAATTGAAGTCACAAAAAAAGCTAGACAGT
CAGATACTGGTAGGCATTGTTTGTTTTCATGGTAACTCTGTGTTCTGTAC
GCACCCGTACTCACTGTTTTGCTTTAACACCCTGTTGTATGGTAAGTGCA
TATTTCTTTTTTTTATCACAGATCGCCTTTTTTGTGATATTCCTACCTTT
TATACCATTAATCATTACCCCCCCGTCATTGCCCCCTAAATTTTTCCTAT
TTTGCCACTTAACGAAACCAACTTTTTCCGATGTCGCATTTATATCTTTG
TTATTTCCCCTTACTCACTATTTTCTTTTTTTATTTACATACTGCCTTTT
CCACCTTATTTTTTTTTTTCCCTCCTCCCTTTCCTCTTCCATATAACTCT
TCTTTCTCCTCCCTGTCCACCAATTTACCCATTCTACCTTTAATATCCTT
ATTAATACTAACCCCCCCCTCTCCCCCCCCTTTTATCTTTTTTTCTCCCC
ATTCTTTTTTTCTCCCCCCCCCCCCTTCCTTTTTTTTTATCATCCACACC
TTTCCTCATATTTCTTTTCCTTTTCTCCCATACCCTTTTTTTTCA
TCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCGAGAAAATTCTTAAGGCTGTATAAGACAAGAGAT
GTAAATGCTCATACATGTGACATCTTGCTCCATGTGACATCCTGAGACAC
ATCAGGACTCACATGCAAGAAGGGCCACCTTCAAGTGTAGATAAGCATCT
TTTCTTCAGGATGTTACCCAGTCTTTGGTAATTTGTTATCTTAATAAAAA
CATGTATTAATACAGTCTGAAGAAGAAAGCCTACTTAAGCTGAGATTTAA
GTAGCTTTTAGGCTAATTTTCATAATATTATGTCATTATGGCTCAGGGAA
GTGTGATCGTCTATATCAACCCGAGGTCTTGCTGCATTGTCACATTACCA
TGAATTTGTGTCCGCCCTTGAAACTCTTTCCGTTACTCTCCCCCGCCCCC
GCGGTTACCACCCTTGCCTGTCCCTGCCCACGATTTGTTTCTATTCCCCA
TACTTTTACACTTCATTATTCTCCTCCCTGTCCCTCCCCTCCCCCCGTTC
TTTTTTCCTTTTTTTCTTTCCCCTTCCATTTTTTCCCCTTTTTTTCCCCC
TCATCTCTTCCTCCCCCCTCCTTTTTCCCCTCTCTTCTTTATCTCTTTTA
ACTCTATTATAAACTCTCTCTTTTTATTTACTTCTCCCTATTACCCGTTC
TGTTCTCTTACCCTCCCCCCCTCCCCTCTTCTCCTCCCCCTTCTTTCCTT
GTCTATTCTCCCTCTTCTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_j10.g1 MSMg01no439_j10.g1 CHROMAT_FILE:
MSMg01no439_j10.g1 PHD_FILE: MSMg01no439_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:45 2005
         (242 letters)



>mm_chr15_85083404_85084045
          Length = 642

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttaaggctgtataagacaagagatgtaaatgctcatacatgtgacatcttgctccatg 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 442 tcttaaggctgtataagacaagagatgtaaatgctcatacgtgtgacatcttgctccatg 383

                                                                       
Query: 61  tgacatcctgagacacatcaggactcacatgcaagaagggccaccttcaagtgtagataa 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 382 tgacatcctgagacacatcaggactcacctgcaagaagggccaccttcaagtgtagataa 323

                                                                       
Query: 121 gcatcttttcttcaggatgttacccagtctttggtaatttgttatcttaataaaaacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gcatcttttcttcaggatgttacccagtctttggtaatttgttatcttaataaaaacatg 263

                                                                       
Query: 181 tattaatacagtctgaagaagaaagcctacttaagctgagatttaagtagcttttaggct 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gattaatacagtctgaagaagaaagcctacttaagctgagatttaagtagcttttaggct 203

             
Query: 241 aa 242
           ||
Sbjct: 202 aa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)