Query= MSMg01no441_f08.b1 MSMg01no441_f08.b1 CHROMAT_FILE:
MSMg01no441_f08.b1 PHD_FILE: MSMg01no441_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:04 2005
(342 letters)
>mm_chr15_23388178_23388922
Length = 745
Score = 574 bits (297), Expect = e-168
Identities = 332/345 (96%), Gaps = 3/345 (0%)
Strand = Plus / Minus
Query: 1 ataaatgtcttattcagacatgaatatgcaagcctactggctgaataagttggatgccca 60
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 418 ataaatgtcttattcagacataaatatgcaagcctactggctgaaaaagttggatgccca 359
Query: 61 ggcatgggtacaatattttttatggagatgttgtaataatattgtaatgccttagaaaca 120
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggcatgggtacaatattttatgtggagatgttgtaataatattgtaatgccttagaaaca 299
Query: 121 gtgaaattcacagccttttaaa---aataatatcagctgtaatagttcatttatggagct 177
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 298 gtgaaattcaaagccttttaaaaataataatatcagctgtaatagttcatttatggagct 239
Query: 178 ttggagtgcaaggaatattttgcaattgataattttgtgttatttttaatgaatatattt 237
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 238 ttggagtacaaggaatattttgcaattgataattttgttttatttttaatgaatatattt 179
Query: 238 atagtaaaatatattgtagaatggatgtctgtctttcagcttctgttttagtaatgatag 297
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 atagtaaaatgtattgtagaatggatgtctgtctttcagcttctgttttagtaatgatag 119
Query: 298 aagcatataatataaaagtagtacaatggacaatactattggcca 342
|||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 118 aagcctataaaataaaagtagtacaatggacaatactattggcca 74
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 745
Length adjustment: 9
Effective length of query: 333
Effective length of database: 736
Effective search space: 245088
Effective search space used: 245088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_f08.g1 MSMg01no441_f08.g1 CHROMAT_FILE:
MSMg01no441_f08.g1 PHD_FILE: MSMg01no441_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:04 2005
(516 letters)
>mm_chr15_23246603_23247519
Length = 917
Score = 659 bits (341), Expect = 0.0
Identities = 450/519 (86%), Gaps = 55/519 (10%)
Strand = Plus / Plus
Query: 1 acttacagctaccacaagaaggaaacagtatttatactgatttttgaataggtaagatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttacagctaccacaagaaggaaacagtatttatactgatttttgaataggtaagatta 260
Query: 61 aactgggtaatttctctatctgaagctcaaataattacaattctcaataatgcatgcgga 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 aactgggtaatttctctatctgaagctcaaataattacaatcctcaataatgcatgcgga 320
Query: 121 agctcttcaaatcacctgtcaattcaggaaaatccagaaagagccatggttgctttcagt 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 agctcttcaaatcacctgtcaattcagggaaatccagaaagagccatggttgctttcagt 380
Query: 181 cc-aaagattgagtacccttcatt--ttttttttatgcacttgtgttattttatttcttt 237
|| ||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 381 cccaaagattgaatacccttcattgtttttttttatgcacttgtgttattttacttcttt 440
Query: 238 taacccatactgaacagatgcttcactgaaaagagtactttgaaaagtcatagaatggca 297
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 taacccatactgaacagatgcttcactgaaaag--tactttgaaaagtcatagaatggca 498
Query: 298 tctatctatccatccatacactgatccattgattcatctatctatctatctatctatcta 357
||||||||||| ||||||||||||||||||||||||| |||| ||| ||| ||| |||
Sbjct: 499 tctatctatccctccatacactgatccattgattcat--atctctctctctctctctctc 556
Query: 358 tctatctatctatctatctatctatctatctatctatctatctatctatctatctatcta 417
||| ||| ||| ||
Sbjct: 557 tctctctctct--ct--------------------------------------------- 569
Query: 418 tctgcatgtatacattcttcacaaatgtaatttcacaaacagtccttttacagcattctt 477
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 -ctgcatgtatacactcttcacaaatgtaatttcacaaacagtccttttacagcattctt 628
Query: 478 tatatgttttttaaacttcagacaaattcatagacagta 516
|||||| ||||||||||||||||||||||||||||||||
Sbjct: 629 tatatggtttttaaacttcagacaaattcatagacagta 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 917
Length adjustment: 10
Effective length of query: 506
Effective length of database: 907
Effective search space: 458942
Effective search space used: 458942
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
