BAC Information

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BAC

Clone NameMSMg01-444K12
Chromosome15 (Build37)
Map Location 13,177,766 - 13,178,014
singlet/doubletsinglet
Overlap genenone
Upstream geneMtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6
Downstream geneLOC100039907, LOC666686, LOC239338, LOC666708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444K12.T7 (MSMg01no444_k12.b1)MSMg01-444K12.TJ (MSMg01no444_k12.g1)
ACCAG533771AG533772
length754736
length of high quality
(start - end)
249 (70 - 318)321 (326 - 646)
definitionCHROMAT_FILE: MSMg01no444_k12.b1 PHD_FILE: MSMg01no444_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:37 2005CHROMAT_FILE: MSMg01no444_k12.g1 PHD_FILE: MSMg01no444_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATACTTTTCCGTGGGTAGAAGGAGGTCAGCATTTGGAGAAGATTC
TTTTTGAACACTGCTGCCTCTATGAAGGAGTGTCCCTCCTGTCGCCCCTG
CCTCTCATCTCACAGATATGAGAGGTTTTTCAGGACACAACTTGAGAGAT
GATGACAACTAATGAATTCAACTCTGTAACCTGCTGTTGAAACACTCAAG
AGGCACAGACTGAATAGTTGTGAAAAACAAAATGCAGTAATATTGATCCT
GTCTAAGGTCTAAGTGTATTTCCAGTAGCTTGTTGGGCAAAGAGTGCATG
GATGTTTCTTATGGGTATATCAAGTATGCGAGAAAAGGCCATTGGGGGTC
GGGTTAGGCATCGTTATTGATTTGACTTAACAAGTTCATCACTAATTGAC
TGTATGGACTTGGGACAGAAGCTGAGGCTGGTTTTAGGAGGTTTTGAACT
AACTTTCAGAATACAGCATATTTATTCTTCCAGAGTGCTCGGATATATAT
GTTAACCTTCTCACCTTCGTTGTGCGTTCCCGCCCCTTCCCCGTAAAATA
TCCTGCTCCTTACGCCAGCTTCCCCTTTCTTAATATTCTCTCCTCCCCTT
CCCCAAACAGTCATTACCGGATCTGACTCTCTTCACTCCCGGTCTCTTTT
TACGATCCTTGATGCCCTTGGCCTTCCCTTTCGTTTACTTTGCTGTTGCC
GCTN
NACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCTTTTAACTGGATATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATTAG
TGTATATTAGCCCAAAATCTAAGATACCCAAGATATAAGATACAATTTCC
TACACACCTGAAACTCTCGATAAATGAAGACTGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_k12.b1 MSMg01no444_k12.b1 CHROMAT_FILE:
MSMg01no444_k12.b1 PHD_FILE: MSMg01no444_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:37 2005
         (249 letters)



>mm_chr15_13177566_13178214
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtagaaggaggtcagcatttggagaagattctttttgaacactgctgcctctatgaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtagaaggaggtcagcatttggagaagattctttttgaacactgctgcctctatgaagga 260

                                                                       
Query: 61  gtgtccctcctgtcgcccctgcctctcatctcacagatatgagaggtttttcaggacaca 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtccctcctttcgcccctgcctctcatctcacagatatgagaggtttttcaggacaca 320

                                                                       
Query: 121 acttgagagatgatgacaactaatgaattcaactctgtaacctgctgttgaaacactcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttgagagatgatgacaactaatgaattcaactctgtaacctgctgttgaaacactcaa 380

                                                                       
Query: 181 gaggcacagactgaatagttgtgaaaaacaaaatgcagtaatattgatcctgtctaaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggcacagactgaatagttgtgaaaaacaaaatgcagtaatattgatcctgtctaaggt 440

                    
Query: 241 ctaagtgta 249
           |||||||||
Sbjct: 441 ctaagtgta 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)