BAC Information

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BAC

Clone NameMSMg01-446E06
Chromosome15 (Build37)
Map Location 17,426,257 - 17,426,524
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040119, Cdh9
Downstream geneLOC100040162, LOC666835, LOC666839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446E06.T7 (MSMg01no446_e06.b1)MSMg01-446E06.TJ (MSMg01no446_e06.g1)
ACCAG535002AG535003
length734752
length of high quality
(start - end)
269 (321 - 589)245 (67 - 311)
definitionCHROMAT_FILE: MSMg01no446_e06.b1 PHD_FILE: MSMg01no446_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:44 2005CHROMAT_FILE: MSMg01no446_e06.g1 PHD_FILE: MSMg01no446_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTT
CACTTCCAAAAAGAACAGAATTAATTCACAAGTCAGTAATTTATTCTCTT
TCTACAAGATAAAAATTATATATTAAGACTAACAAACTACTAAAATATGC
AGTTAAATTGTAATGAGATTAAAATCCTTGGAAGTTTATAATGCAAGCTG
ACAATATTTCTTTATGAGTAGTTAAACATACATACACACAATGGTATTAT
ATTCAGGCACAAAAGGGTTATAAAATGAGAGATCACTGTGGAAACAGAAC
TAAATTAGATTTTGTANTTCAAGTACTGCCTAAAGATTTAAAGGAGCATG
TGGTAAAGCAGACTATGAAAGGACCTGTGGTCTGCTGCAAATCTCAGATG
CTCATATTTGTAGACAAACTCCAGATACATTAATCTACATGGTCAGTTGA
ATATACATATTTTTAATGTTTTCACCACAAAAAGTGACAAATAGGTAAGG
CAAAGTATATGTCCATTGATTTCAATTCGCCATTCTACAACGCATTCGTA
TGCCAAAATATGTTGGTTTGCTTCATGAATATGTAAAAGTTATCCCACAA
TTTAAACAAATCAGTATGAAGGTCTGTTTTTTTTAAAGCATATCCCATCT
ATTTACTTAAAATAATGTCCCACGTGATGATTAACGAATTATGAGTATAT
AGAACTCTTCCTCGGCGACTTGAGTTAAGTTCCT
GTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTTACACTGGGGTATCGAGCCTTCAAAGGACCA
AGGGCCTCTCCTCCCATTGATGACCAACTAGGCCATCCTCTGCTACCTAT
GCAGCTGGAAGCCATGGGTCCATACATGTGTACTCTTTGGTTGGTGGTTT
AGTCCCTGGTAGCTCTGGGAGGTCTGGTTGGTTGATATTGTTGTTCTTAC
TGCAAACACCTTCAGCTCTTCCAGTCCATTTTCTAAATCCTCTGTTGGGG
TCCCATGCTCTTTCCTTTACAGAGGGTCAGGAATTTGAACAGAGGTGTGT
GTTTATGGGGGATAGGGAACTGAGGGTAGCCACCAGCAAGTCCAAGATGC
CCTAAAGCAAGAGACTCCCAGGACACTATGGGGATGAGATTAGCTGAAAT
GCCAACAAAGGGGAGGGAGAAGCTGTACAGACCATATCCAAAAGTTAGTC
AACGCCCCCCGGTTGGCTGATGGAGTCTCCCACTCATCTCCTAATCTTTG
ACCCATAAGCGCTTCTGTCTAAAGGAAATATGTGTTCAATGCGCTGATCT
TAATATTGATATTATTGGTCTATTATAACTTTCGCTCTACCGGGGTAAAC
ATCCTTTTTTATATACCCTAAGCTGCCGATATCCTCTGTTTAATGCCCAT
CATTGTATTTCTTTTACTTGTCTTAGTATTACCCCCCATCCTCTTATTTC
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_e06.b1 MSMg01no446_e06.b1 CHROMAT_FILE:
MSMg01no446_e06.b1 PHD_FILE: MSMg01no446_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:44 2005
         (269 letters)



>mm_chr15_17426187_17426855
          Length = 669

 Score =  503 bits (260), Expect = e-147
 Identities = 266/268 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   agtactgcctaaagatttaaaggagcatgtggtaaagcagactatgaaaggacctgtggt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 agtactgcctaaagatttaaaggagcatgtggtaaagcagactatgaaaggacctgtggt 279

                                                                       
Query: 62  ctgctgcaaatctcagatgctcatatttgtagacaaactccagatacattaatctacatg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ctgctgcaaatctcagatgctcatatttgtagacaaactccagatacattaatctacatg 219

                                                                       
Query: 122 gtcagttgaatatacatatttttaatgttttcaccacaaaaagtgacaaataggtaaggc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gtcagttgaatatacatatttttaatgttttcaccacaaaaagtgacaaataggtaaggc 159

                                                                       
Query: 182 aaagtatatgtccattgatttcaattcgccattctacaacgcattcgtatgccaaaatat 241
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 158 aaagtatatgtccattgatttcaattcgccattctacaacgcattcctatgtcaaaatat 99

                                       
Query: 242 gttggtttgcttcatgaatatgtaaaag 269
           ||||||||||||||||||||||||||||
Sbjct: 98  gttggtttgcttcatgaatatgtaaaag 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)