BAC Information

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BAC

Clone NameMSMg01-446H10
Chromosome15 (Build37)
Map Location 63,069,408 - 63,069,650
singlet/doubletsinglet
Overlap genenone
Upstream genePvt1, LOC100040430, Tsg101-ps
Downstream geneEG239502, EG432959, LOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik, Ddef1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446H10.T7 (MSMg01no446_h10.b1)MSMg01-446H10.TJ (MSMg01no446_h10.g1)
ACCAG535152AG535153
length719761
length of high quality
(start - end)
471 (64 - 534)244 (86 - 329)
definitionCHROMAT_FILE: MSMg01no446_h10.b1 PHD_FILE: MSMg01no446_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:00 2005CHROMAT_FILE: MSMg01no446_h10.g1 PHD_FILE: MSMg01no446_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGAGTTTTCCGCTATCTCTAAAACCTTGTGCTCTCTCAACAGTAAAGGGG
GAACCTTGTGAGATTCTTGCACCTACTGGCAATTCTCCAAAATTGACCAT
ATAATTGTTCACAAAACAGGCCTCAACAGATACAAAAATATTGAAATTAT
CCCATGCATCCTATTAGATCACCACGGACTAAGGCTGATCTTCAATAACA
ACATAAATAATAGGAAGCCAACATTCACGTGGAAGCTGAACAACACTCTA
CTCAATGATAACTCGTTTAAGGAAGAAATAAAGAGAGAGATTAAAGACTT
TTTAGAGTTTAATGAAAATGAAGCCATGACATACCCAAACTTATGGGACA
ATGAAAGCATTCCTAAGAGGAAAACTCATAGCTCTGAGTACCACCAAAAA
GAAACTGGAGAGAGAGCATACACTAGGAGCTTGACAGCACACCTAAAAAC
GCTAGAACAAAAGGAAGCAAATTTACTGAAGAGGAGTAGACAGCAGGAAA
TAATCAAACTTATGGCTGAAATAAACCAAGTGGAAACAAAACGAACTGTA
CAAAGAATCAAACAAACCATGAGCTGGTCCTTTGAGAAAAATCAACAAGA
AAGATAAACCCTTAGCCACAATAACTAGAGTGCATAGGGACAGAATCCTA
ATTAACATAATCTTAAATG
CCCTACTTTCTCAATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATGGAATCCAGTG
GAAGATAGAATATTTGTGTGATCCTGACATGTGGACCAGCTGGGCTGAAG
AACAGGGCATGGAAGCAGGGAAGCAGGGAATGGATTTAGAGAAGAAAGTA
GAAATGAGCGCAGAACTCTTCATTAGTCTTATGAAAGAGGTACTGTATAT
GATCTCCTTTTGAAGTTTAGAAAAATGGAGACAGAGTCTTCAACTCACTG
CACATTGAAAGCAGTAATTCATGTTCATTTTTGTTGCAGAGAACTGAAGT
CTAGCTTTCTAAACTCCAAAGTGTAGGACACATTTTCTGTACTGTTTCTT
TAATGGTAAATTGCATACTGTATAAAATATTTTAGGTATTATTTTTTTCT
TTTAATTATTTTAGTGGTGCGCGCGTGTTTCTCTCCCCTTTTCCCCATTA
TTTCCCCCTCCTTCTCCTTCACCCCCCCCCCCCCCCCTCTCCCCTTTTTT
TCCTTTTCCCCTTTCCCCCTTTTTCCCTTCCCCCCCCCCCTCTTTTCCCC
TCCTTTTTCCCCTTTCCCCCCCCTCTTTCTCCCTCCCCCCCCCCCTCTTC
CTTCTATCTCACAAAACTTTTTTTCCTTTCTTTTTCCCTCCCCCCCTTCC
CTTCCTTTTTTTCCCCCCACCTTTCTGCCCCCCTTCCACTTTTCTCTTCC
CTTCTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_h10.g1 MSMg01no446_h10.g1 CHROMAT_FILE:
MSMg01no446_h10.g1 PHD_FILE: MSMg01no446_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:00 2005
         (244 letters)



>mm_chr15_63069208_63069851
          Length = 644

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatggaatccagtggaagatagaatatttgtgtgatcctgacatgtggaccagctgggc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acatggaattcagtggaagatagaatatttgtgtgatcctgacatgtggaccagctgggc 384

                                                                       
Query: 61  tgaagaacagggcatggaagcagggaagcagggaatggatttagagaagaaagtagaaat 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgaagaacagggcatggaatcagggaagcagggaatggatttagagaagaaagtagaaat 324

                                                                       
Query: 121 gagcgcagaactcttcattagtcttatgaaagaggtactgtatatgatctccttttgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gagcgcagaactcttcattagtcttatgaaagaggtactgtatatgatctccttttgaag 264

                                                                       
Query: 181 tttagaaaaatggagacagagtcttcaactcactgcacattgaaagcagtaattcatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttagaaaaatggagacagagtcttcaactcactgcacattgaaagcagtaattcatgtt 204

              
Query: 241 cat 243
           |||
Sbjct: 203 cat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)