BAC Information

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BAC

Clone NameMSMg01-447G10
Chromosome15 (Build37)
Map Location 71,610,062 - 71,610,418
singlet/doubletsinglet
Overlap geneLOC100040847
Upstream geneLOC383051, 1700010C24Rik
Downstream geneCol22a1, Kcnk9, 1810044A24Rik, LOC665621
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447G10.T7 (MSMg01no447_g10.b1)MSMg01-447G10.TJ (MSMg01no447_g10.g1)
ACCAG535866AG535867
length763810
length of high quality
(start - end)
249 (69 - 317)357 (74 - 430)
definitionCHROMAT_FILE: MSMg01no447_g10.b1 PHD_FILE: MSMg01no447_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:17 2005CHROMAT_FILE: MSMg01no447_g10.g1 PHD_FILE: MSMg01no447_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGACCCTTCCAGACTTCGAGCAGAAGGAATGAAGAAAATAATCC
TGAGAGTAAAGCACATAGCTGATGTGATGGTACTTTAGTTTAGCTATGAG
AAAATACCAGAACCAGGGCAAATCACAGAAGAGTCTGCTGGGGCTCAGGA
TTCTAGAGTGAGAGTCCATAAAGGCAGGAACGACATGGAAGAAGGCAAGC
AGATGAGGAAGCTGAAAGTCTATATATTCAACTATAAATCCGCAGCAAAG
AAAGGGAAACAGAAATGGTATGTGGCTATAGTCTTTCAAAGCCCACCTTC
AGTAATATTCTTCCTCCACCAAGGCTCCACCCACTAAAAGCTCAACACTG
TTCCCAAGCAATTCCAAAAAGCTAGGGATCAAGTGTTCATCTATTTAAGC
CTACAGGGGTCATTATTCATTCAAACTATACTACTGGTACAAGAAAAATT
AAGTGACAAAATAAATACATAGACAAATAAATAAAATAAAATAACCTCAA
AACAGTGAAATATTTTATATAATACAGAAAAACAAAGTAAGAATGATAGT
CAACATCTCCCCAAAAATAATTACACACACGTACAAATGTAGAGTGTACT
AAATGCATTGCATAAACACGTACAGGAGAGCACTTGCAGGAAGTTCTGCA
CACAGTGAACATATCTTCCATGACCTAAGACAAAATAAAGATTCTTTCGT
AGCAACAATAGTT
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTGATGAGTTTATGTTGCTTTGAAAC
AGCATGCATGTATGCATTTGTATTTGAACATGTATAATATATTTGTGGTA
CTTTGTTGTCTTATAGAGGAAAACGTATATGTCTGCATTGGTTTAGTTTA
GCTTTGTTAGTTGCAATAAAATTTGATTGTCCTGGTTGGATTATCTCAGA
ATGGCCTTTCTGTTTTGCCTAGTGGAATGTATTTTGGACCATAGCTTCCT
TTGCAATGTTGAATCCATCCTTAATTATTTAACTGTCCAATTGTTAATTT
CTCTAACCCAATAGTGTATTTCAGAACTAGATCCAGAGTTTTGTTGTTTT
AATGAGCTTTGAATCCTCTGTGTTCTATTTGGCGGGCATTGAATGGATCT
GTTTGCAATGTACCTCTTATATATATCCATTCTTTGACACCCTACTCAGG
CACCTCGCCCGTGATGCTCCTCTTTTTTTTTTGACCTTTCACCCTTATCT
TCACACCTTTTCCCTTCCTTCCTCTTCTTCCCTTTTTCTCCTTCTTTTTT
TCTTTCTTTCTCTATCTCCTATTTTTCTCTTCCTCTCCTCTTTCTCCTTC
CCTTCCTTCTTTCTTTTTTCTCCTTCCTTCCTTCATAAACACTTTATTCT
CTCCTTTTCTTCTCCCTATTCTTTTCCCCTTCCCTCTCTTCCTTCCTTCT
ATTTTCATCCCCCTCCTTATTTCACCCTACCTCCTCCTTTCCTCCTCCTT
CTCCTTCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_g10.g1 MSMg01no447_g10.g1 CHROMAT_FILE:
MSMg01no447_g10.g1 PHD_FILE: MSMg01no447_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:17 2005
         (357 letters)



>mm_chr15_71609862_71610618
          Length = 757

 Score =  669 bits (346), Expect = 0.0
 Identities = 355/358 (99%), Gaps = 2/358 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgatgagtttatgttgctttgaaacagcatgcatgtatgcatttgtatttgaacatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agtgatgagtttatgttgctttgaaacagcatgcatgtatgcatttgtatttgaacatgt 498

                                                                       
Query: 61  ataatatatttgtggtactttgttgtcttatagaggaaaacgtatatgtctgcattggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ataatatatttgtggtactttgttgtcttatagaggaaaacgtatatgtctgcattggtt 438

                                                                       
Query: 121 tagtttagctttgttagttgcaataaaatttgattgtcctggttggattatctcagaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tagtttagctttgttagttgcaataaaatttgattgtcctggttggattatctcagaatg 378

                                                                       
Query: 181 gcctttctgttttgcctagtggaatgtattttggaccatagcttcctttgcaatgttgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gcctttctgttttgcctagtggaatgtattttggaccatagcttcctttgcaatgttgaa 318

                                                                       
Query: 241 tcca-tccttaattatttaactgtccaattgttaatttctctaacccaatagtgtatttc 299
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tccact-cttaattatttaactgtccaattgttaatttctctaacccaatagtgtatttc 259

                                                                     
Query: 300 agaactagatccagagttttgttgttttaatgagctttgaatcctctgtgttctattt 357
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 258 agaactagatccagagttttgttgttttaatgagttttgaatcctctgtgttctattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)